Prionailurus viverrinus (fishing cat): 125167831
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Entry
125167831 CDS
T09889
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pviv
Prionailurus viverrinus (fishing cat)
Pathway
pviv04140
Autophagy - animal
pviv04148
Efferocytosis
pviv05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125167831 (VPS39)
04148 Efferocytosis
125167831 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
125167831 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pviv04131
]
125167831 (VPS39)
Membrane trafficking [BR:
pviv04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
125167831 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
Lgl_C
SAM_CEP-1_C
EcoR124_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
125167831
NCBI-ProteinID:
XP_047718554
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All DBs
Position
B3:56457055..56503886
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AA seq
875 aa
AA seq
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MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDAGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLEHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLVENFKSLAIPYLEHVIHVW
EETGSQFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEYRRKLLIFLEIS
GYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTKMAEEYCHKHYDQNK
DGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgccttcgagccagtgccgatcctggaaaagctgcctctgcagatcgactgt
ctggctgcctgggaggaatggcttcttgttggcaccaaacaaggacatcttcttctctat
aggatccggaaagatgctggttgcaacaggtttgaagtgacactagagaaatccaataaa
aacttctccaaaaagattcaacagatccatgtggtttcccagtttaagattctggtcagc
ttgttagaaaataacatttatgtccatgacctgttgacatttcaacaaatcactacggtt
tcaaaggcaaagggagcatcactgttcacatgtgaccttgagcacacagagaccggtgag
gaggtgttgcggatgtgtgtggcagtgaaaaagaagctgcagctctatttctggaaggac
agggaatttcacgaattgcagggggactttagtgtaccagatgtgcccaagtccatggca
tggtgtgaaaattctatctgtgtgggtttcaagagagactactacctaataagggtggat
ggaaaggggtccatcaaagagctctttccaacaggaaaacagctggagccgttagttgca
cctctggcagatggaaaagtggctgtgggtcaggatgatctcaccgtggtgctcaatgag
gaggggatatgcacacagaaatgtgccttgaactggacagacataccagtggccatggag
caccagcctccctacatcattgcagttttgcctcgatatgtggagatccgaacattcgaa
ccgaggcttctggtccagagtattgaattgcaaaggccccgcttcattacctcgggagga
tcaaatattatctatgtggccagcaatcattttgtttggagactcattcctgtccccatg
gcaacccaaatccaacagcttctccaggacaagcagtttgaactggctctacagcttgca
gaaatgaaagatgattctgacagtgaaaagcagcaacagatccatcacattaagaacttg
tatgccttcaacctcttctgccagaagcgttttgatgagtccatgcaggtctttgctaag
cttggcacagatcctacccatgtgatgggcctgtacccggacctgctgcccacagactac
aggaaacagctacagtaccctaacccactgcctgtgctctcgggggctgaattggagaag
gcacacttagctctgattgactacctgacacagaaacgaagccaactggtaaagaagctg
aatgactctgatcaccagtctagcacctccccgcttatggaaggcactcccaccattaaa
tccaagaagaagctgttgcaaatcatcgacaccaccttgctcaagtgctacctgcatacg
aacgtggccctggtggcccctctgctgcgcctggagaacaatcactgccacatcgaagag
agcgagcatgtgctgaagaaggcgcacaagtacagcgaactgataatcctgtatgagaag
aaggggctccatgagaaagctctgcaggtgctggtggaccagtccaagaaagcaaactcc
cctctgaaaggccatgagaggaccgtgcagtatctgcaacatttgggcacagaaaacttg
catttgattttttcctactcagtgtgggtgctgcgagacttcccagaggatggcctgaag
atatttaccgaagatctcccagaggtagagtccctgccgcgagaccgagtgcttggcttc
ttggtggagaattttaagagtctggctattccttatctggaacatgtcatccacgtttgg
gaggagacaggctctcagttccacaactgcctaatccagctgtactgtgagaaggtgcaa
ggtctcatgaaggaatatctcctgtccttccctgcaggcaaaactccagttcctgctgga
gaggaagaaggtgagctgggagaataccgacggaagctccttatattcttggaaatttct
ggctactatgatccaggccggctcatctgtgacttcccttttgatggcctcttagaagag
cgcgcactgctgctggggcgcatggggaagcatgagcaagccctcttcatctatgtccac
atcctgaaggacacaaagatggctgaggagtactgccacaagcattatgaccaaaataaa
gatggcaacaaagatgtgtatctgtccctgctccggatgtacctgtcaccccccagtgtt
cactgcctgggaccaatcaagctggaactgctggagccacaagccaacctccaagctgcc
ctgcaggtcctcgagctgcaccacagcaagctggacaccactaaggccatcaaccttctc
ccagcaaacactcagattaatgatatacgcatctttctggaaaaggtcttggaagaaaat
gcacaaaagaaacggttcaatcaagtgctcaagaaccttctccatgcggaatttctgagg
gtccaggaagagaggattttacaccagcaggtgaagtgcatcatcaccgaggagaaggtg
tgcatggtgtgtaagaagaagatcgggaacagtgcatttgcgagataccccaatggcgtg
gtcgtgcactacttctgttccaaagaggtaaacccagctgacacctga
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