Prionailurus viverrinus (fishing cat): 125169736
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Entry
125169736 CDS
T09889
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pviv
Prionailurus viverrinus (fishing cat)
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pviv03016
]
125169736 (RTCB)
Enzymes [BR:
pviv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
125169736 (RTCB)
Transfer RNA biogenesis [BR:
pviv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125169736 (RTCB)
Prokaryotic type
tRNA splicing ligases
125169736 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
125169736
NCBI-ProteinID:
XP_047721417
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All DBs
Position
B4:complement(124718879..124740498)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctataatgatgagctgcagttcttggaaaagatcaataaaaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gctctggaaaaattaatgtttgaggaattaagaaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacaaattggcaatgtggcagccctgcctgggattgttcat
cgatctatcgggcttcctgatgtccactcaggttatgggtttgctattgggaacatggca
gccttcgatatgaatgaccccgaagcagtggtatccccaggtggtgtcggatttgacatc
aactgcggtgtccgcttgcttagaaccaatttagatgaaagcgatgtccagccagtgaag
gagcagcttgcccaggctatgtttgaccacattcctgttggggtgggatcaaaaggtgtc
atccccatgaatgccaaagacttggaggaggccttggagatgggtgtggactggtccctg
agggaaggctacgcctgggctgaagacaaggagcactgtgaggagtacggaaggatgttg
caggccgatcccaataaggtctccgcaagggctaagaaaagaggccttcctcagttgggg
accctgggagcaggaaaccactatgcagaaatccaggttgtggatgagattttcaatgag
tacgctgctaagaaaatgggcattgaccataagggacaggtgtgtgtgatgatccacagc
ggaagcagaggcttgggccaccaagtagccacagatgcactggttgctatggaaaaagcc
atgaagagagacaagatcatagtcaacgaccggcaattggcttgtgctcggatcgcttcc
ccagagggtcaggactacctgaagggaatggcagctgctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaactcct
gatgacttggacctacacgtgatctatgatgtttctcacaatattgccaaagtcgaacag
cacgtggtggatggaaaggaacggacactgttggtgcacaggaagggatccacccgagct
tttcctcctcaccatccccttattgctgttgattaccaactcactggacaaccagtgctc
attggtggcaccatgggcacctgtagttacgttcttactggcactgaacagggcatgact
gagaccttcggaacaacttgtcacggagcgggccgtgcgttatcccgagcaaaatctcga
cgtaatttagatttccaggatgtcttggacaaactggcagatatgggaattgcaatccgc
gttgcctcgcccaaactggttatggaagaggctcctgagtcctacaagaatgtgaccgac
gtggtgaacacctgccatgatgctgggatcagcaagaaggccattaaactgagaccaatt
gctgtgatcaaaggatag
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