Prionailurus viverrinus (fishing cat): 125170008
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Entry
125170008 CDS
T09889
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
pviv
Prionailurus viverrinus (fishing cat)
Pathway
pviv03013
Nucleocytoplasmic transport
pviv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125170008 (UPF2)
03015 mRNA surveillance pathway
125170008 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pviv03019
]
125170008 (UPF2)
Messenger RNA biogenesis [BR:
pviv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125170008 (UPF2)
mRNA cycle factors
P-body specific factors
125170008 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
125170008
NCBI-ProteinID:
XP_047722006
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All DBs
Position
B4:complement(7986642..8096630)
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AA seq
1282 aa
AA seq
DB search
MQPTKIVLGNIMPAERKKPASMEEKETLLNNKEKDCSERRPVSSREKPKEEIKLTAKKEV
IKVPEDKKKKLEEDKRKKEDKERKKKEEEKVKAEEELKKKEEEEKKKHEEEEKKKQEEQV
KRQQEEEAAQLKEKEESLQLHQEAWERHQLRKELRSKNQNAPDNRPEENFFSRLDSSLKK
NTAFVKKLKTITEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFH
QRYADFAPSLLQVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQ
LKNIINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQ
PFQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLL
ANSQSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYEN
LIDLKAFVPAILFKDNEKSCQNKDSNKDDSKEAKEPKDNKEVSNPEDLELELENLEINDD
TLELEGGDEAEDLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMD
FCMNMNTKANRKKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRF
HVRKKDQINIETKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETC
GRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPP
LQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANL
LAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIF
RTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQ
RYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVHDLEREFLIK
LGLVNDKDSKESMTEGENLEEDEEEEEGGAETEEQSGNESEVNDPEEEEGSDNDDDEGEE
EEEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSG
ESVKVHQLDVAIPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPM
SSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRP
RYQHPKGAPNADLIFKTGGRRR
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgaccaaaattgttctgggtaacataatgccagctgagcgtaaaaagccagca
agtatggaagaaaaagaaactttactaaacaacaaggaaaaggactgcagtgaaaggcgg
ccagtgagcagcagggagaaaccaaaagaggagatcaaacttactgccaagaaggaggtt
attaaggtccctgaagataaaaagaagaaactggaagaagataagagaaaaaaagaagac
aaggaacgaaagaaaaaagaagaagaaaaggtgaaggcagaggaagaattaaagaaaaaa
gaggaagaagaaaaaaagaaacatgaagaggaagagaaaaagaagcaagaagagcaggta
aaacgtcagcaagaagaagaagctgcccagttgaaagagaaagaagaatcccttcagctt
catcaagaagcttgggaacgacatcagttaaggaaagaacttcgtagcaaaaaccaaaat
gctccagacaaccgaccagaggaaaatttctttagccgactagactcaagcttgaagaaa
aatactgcttttgtcaagaaattaaaaactattacggaacaacagagagactccttgtcc
catgattttaatggcctaaatttaagcaaatacattgcagaagctgtagcttctattgtg
gaagcaaagctgaaaatatctgatgtgaactgtgctgtgcacttgtgttctctctttcac
cagcgttatgccgactttgctccgtcacttcttcaggtttggaaaaaacattttgaagcg
aggaaagaagagaaaacccctaacattaccaagttaagaactgatttgcgtttcattgca
gaattgacaatagttgggattttcactgacaaggaaggtctatccttaatctatgaacag
ctaaaaaatattattaatgctgatcgggaatcccatactcacgtttctgtggtgattagt
ttttgtcgacattgtggagatgatattgctggacttgtaccacggaaagtgaagagtgct
gcggagaagtttaatttgagtttccctcctagtgagataattagtccagagaaacaacaa
cctttccagaatcttttaaaagagtactttacatctttgaccaaacacctgaaaagggac
cacagggagcttcagaatacagagagacaaaacaggcgtattctccattctaaaggagag
ctaagtgaagatagacataaacagtatgaggagtttgctatgtcgtatcagaagttgcta
gcaaattctcaatccttagcagaccttttggatgaaaatatgccagatcttcctcaagac
aaaccaacaccagaagagcatgggcctggaattgatatctttacacctggtaagcctgga
gaatatgatttggaaggtggtatttgggaagatgaagacgctcggaatttttatgagaac
ctcatcgatttgaaagcttttgttcctgccatcttgtttaaagataatgagaaaagttgt
cagaataaagattccaacaaagatgattccaaagaggcaaaagaacctaaagataataag
gaggtatcgaatcctgaagatttggaacttgagttggagaacctagaaattaatgatgat
accttggaattagaaggtggagatgaagctgaggatcttacaaagaaacttcttgatgag
caagaacaagaggatgaagaagccagcactggatctcatctcaagctcatagtagatgct
ttcctacagcagttgcccaactgtgtcaaccgagatctgatagacaaggcagcaatggat
ttttgcatgaacatgaatacaaaagcaaataggaagaagttggtacgggcgctcttcata
gttcccagacaaaggttggatttgctaccattttatgcaagattggttgctacattgcat
ccctgcatgtctgatgtagcagaggatctttgttccatgctgaggggggatttcagattt
catgtacgaaaaaaggaccagatcaatattgaaacaaagaacaaaactgttcgttttatt
ggagaattaactaaatttaagatgttcacaaaaaatgatacactacattgtttaaagatg
cttctatcagacttttcccatcaccatattgaaatggcatgtactctactggaaacatgt
ggaagatttcttttcagatctccagaatcacacctgaggaccagtgtacttttggaacaa
atgatgagaaagaagcaagcaatgcaccttgatgcaagatacgttacaatggtggagaat
gcatattactactgcaacccacctccagctgaaaaaacagtgaaaaagaaacgtcctcct
ctccaggaatatgtccggaaacttttgtacaaggatctctcaaaggttaccactgagaag
gttttgagacagatgcgaaagttgccctggcaggaccaagaagtgaaagactatgttatt
tgttgtatgataaacatctggaacgtgaaatataatagtattcattgtgtagccaacctc
ttagcaggactggtactctaccaagaagatgttggaatccatgttgtggatggagtttta
gaagatattcgattaggaatggaggttaatcaacctaaatttaaccagagacgtatcagc
agcgccaagttcttaggggaactttataattatcgaatggtggaatcagctgttattttt
agaactctttattcttttacttcatttggcgttaacccagatggctctccaagttcacta
gacccgcctgagcaccttttcagaattaggctagtgtgcactattttggatacctgtggc
cagtactttgacagaggttctagtaaacgaaaacttgattgcttccttgtatactttcag
cgttatgtttggtggaagaaaagtttggaggtttggacgaaagaccatccatttcctatt
gacatagattacatgatcagtgatacactagaactgctaagaccaaagatcaaactctgt
aattctctggaagaatccatcaggcaggtacacgacttggaacgagaattcttaataaaa
ctaggcctagtaaatgataaagattcaaaagagtctatgacggaaggagaaaatcttgaa
gaggatgaagaagaagaagaaggaggagctgaaacagaagaacaatctggaaatgaaagt
gaagtaaatgacccagaagaagaggagggttctgataatgatgatgatgagggcgaggaa
gaagaggaagagaataccgattaccttacagattcaaataaagagaatgaaacagatgaa
gaaaatactgaggtaatgattaagggaggtggacttaagcatgtaccttgtgtggaagat
gaggacttcattcaagctctggataaaatgatgctggaaaaccttcagcaacgaagtggc
gaatctgttaaagtgcaccaacttgatgttgctattcctttgcatctcaaaagccagctg
aggaaagggccaccactcggtggtggggagggagaggcggagtctgcagacactatgccc
tttgtcatgttaacaagaaaaggcaataaacaacagtttaagatccttaatgtacccatg
tcttcccaacttgctgcaaatcactggaaccagcaacaggcagaacaagaagagaggatg
agaatgaaaaagctcacactagatatcaatgaacggcaagaacaagaagattatcaagaa
atgctgcagtctcttgcccagcgcccagccccagcaaacaccaatcgggagcggcggcct
cgttaccaacatccaaagggagcacctaatgcggatctaatctttaagactggtgggagg
agacgttga
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