Prionailurus viverrinus (fishing cat): 125171836
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Entry
125171836 CDS
T09889
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
pviv
Prionailurus viverrinus (fishing cat)
Pathway
pviv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125171836 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pviv03041
]
125171836 (PRPF40A)
Spliceosome [BR:
pviv03041
]
Complex A
U1 snRNP components
U1 related factors
125171836 (PRPF40A)
Complex B
125171836 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
125171836
NCBI-ProteinID:
XP_047724927
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All DBs
Position
C1:73895149..73948790
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AA seq
1040 aa
AA seq
DB search
MQATPSEAEAGGESPKSCVSTAHSDWTAGKPVSLLAPLIPPRSAGQPLTFGPSGRQPLRS
LLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMENHPPSRGPGDGERRLSGSSLCSS
SWVSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMP
GMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGTASGAKSMWTEHKSPDGRTYYYNT
ETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGY
QNTIVAGSLITKSNLHAMIKAEETSKQEECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVV
AAAAAAAAAAAAANASASTSASNTVGGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQ
LTSTPAVQDQSMEVSSNTGEETAKQEAVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFK
ELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYK
EAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKE
QAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICF
EEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTIS
SDIRFTNMLGQPVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFE
DFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQA
TPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKK
SKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSK
KRRHKSDSPESDAERDKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSEL
SEGELEKRRRTLLEQLDDDQ
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccaagtgaggctgaggctgggggcgaatcgccgaagagctgcgtgtcg
acagcgcactctgattggacagcggggaagcctgtcagcttattggccccgctgatcccg
ccccgtagcgcagggcagcctttaacctttggccccagcgggcgccagccactcagatcg
cttcttgttggtatgtgtagcggcagtggccgccggcggagcagtctgagcccgacgatg
aggccggggacgggagctgagcgtggaggcctcatggtgagtgaaatggagaaccatcct
ccttcgcggggtcccggggacggggagcggagattgtccggctcaagcctctgctccagc
tcttgggtctctgctgacggcttcctgaggagacggccctcgatggggcaccctggcatg
cattatgccccaatgggaatgcaccctatgggtcagagagccaatatgcctcctgtacct
catggaatgatgccgcaaatgatgccccctatgggagggccgccaatgggacaaatgcct
ggaatgatgtcttcagtaatgcctggaatgatgatgtctcatatgtctcaagcttccatg
cagcctgccttaccgccaggagtaaataatatggatgtagcagctggtacagcgtctggt
gcaaaatcaatgtggaccgaacataaatcacctgatggaaggacttactactacaatact
gaaacaaaacagtctacttgggagaaaccggatgatctgaaaacacctgctgagcaactt
ttatctaaatgtccctggaaggaatacaaatctgactctggaaagccttactattataat
tctcaaacaaaagaatcccgctgggccaaacctaaagaacttgaggatcttgaaggatac
cagaataccattgttgctggaagtcttattacaaaatcaaacctgcatgcaatgatcaaa
gctgaagaaaccagtaagcaagaagagtgcaccacaacatcaacagccccagttcctaca
accgaaattccgaccacaatgagcaccatggctgccgcagaagctgcagccgctgttgtt
gcagccgcagcggcagctgctgccgctgctgctgcagccaatgccagtgcgtccacctct
gcttctaatactgtgggtggaactgttccagttgttcctgagcctgaggttacttcgatt
gttgctactgttgtagataacgaaaatacagtaacaatttcaactgaagaacaagcacaa
cttactagtactcctgctgttcaggatcagagtatggaagtatccagtaatactggagaa
gaaacagctaagcaggaagcagtagctgattttactcccaaaaaagaagaggaggaaagc
caaccagcaaaaaagacctatacttggaatacaaaggaggaggcaaagcaagcatttaaa
gaattattaaaagaaaagcgagtaccatctaatgcttcatgggaacaagctatgaaaatg
atcattaatgatccacgatacagtgctttagcaaagttgagtgaaaaaaagcaggccttt
aatgcttacaaagtccagacagagaaagaagaaaaagaagaagcaagatcgaaatacaaa
gaagctaaggaatcctttcagcgttttcttgaaaatcatgagaaaatgacttccacaacc
agatacaaaaaagcagagcaaatgtttggagagatggaagtctggaatgcaatatcagaa
cgtgatcgtcttgaaatctatgaagatgttttattctttctttcaaaaaaagaaaaggag
caagcaaagcaattacgaaagagaaattgggaagccttaaaaaacatacttgacaacatg
gctaatgtaacatactctactacgtggtctgaagcacagcagtatctgatggataatcca
acctttgcagaagatgaggaattgcagaacatggataaagaagatgcattaatttgcttt
gaagaacacatccgggctttagaaaaggaagaagaagaagaaaaacaaaagagtttgctg
agggaaaggagacgacagcgtaaaaatagagaatcttttcagatatttttagatgaactg
cacgaacatggacaactgcattctatgtcatcttggatggaattgtatccaacaattagt
tccgacatcagattcactaatatgcttggtcagccggttttttcattaggatcaactgca
cttgaccttttcaagttttatgttgaggatcttaaagcacgttatcatgatgagaagaag
atcataaaagacatcttaaaggataaaggatttgtagttgaagtgaatactacttttgaa
gacttcgtggccataatcagttcaactaaaagatcaaccacattagatgccggaaatatt
aagttggctttcaatagtttactagaaaaagcagaagcccgtgaacgtgaacgagaaaaa
gaggaggctcggaagatgaaacgaaaagaatctgcatttaagagtatgttgaaacaagct
actcctccaatagaattggatgctgtctgggaagatatccgggagagatttgtaaaagag
ccagcatttgaggatataactctagagtctgaaagaaaacgaatatttaaagattttatg
catgtgcttgagcatgaatgtcaacatcatcattcaaagaacaagaaacattctaaaaaa
tctaaaaaacatcacaggaaacgttcacgctctagatcggggtcagattcagatgatgat
gacagccactcaaagaaaaaaagacagcgatcagagtctcggtctgcttcagaacattct
tctagtgctgaatctgagagaagttataagaagtcaaaaaaacataagaagaaaagcaag
aagaggagacataaatctgactctccagagtctgatgctgagcgagacaaggataaaaaa
gaaaaagaccgagaaagtgaaaaagacagaactagacaaagatcagaatcaaaacacaaa
tcacctaagaaaaagactggaaaggattctgggaattgggatacttctggcagtgagctg
agtgaaggggaattggaaaagcgcagaaggacccttctggaacaactggatgatgatcaa
taa
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