Prionailurus viverrinus (fishing cat): 125171958
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Entry
125171958 CDS
T09889
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
pviv
Prionailurus viverrinus (fishing cat)
Pathway
pviv03082
ATP-dependent chromatin remodeling
pviv04714
Thermogenesis
pviv05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125171958 (ARID1A)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
125171958 (ARID1A)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
125171958 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pviv03000
]
125171958 (ARID1A)
03021 Transcription machinery [BR:
pviv03021
]
125171958 (ARID1A)
03036 Chromosome and associated proteins [BR:
pviv03036
]
125171958 (ARID1A)
Transcription factors [BR:
pviv03000
]
Eukaryotic type
Helix-turn-helix
ARID
125171958 (ARID1A)
Transcription machinery [BR:
pviv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125171958 (ARID1A)
Chromosome and associated proteins [BR:
pviv03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125171958 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
125171958
NCBI-ProteinID:
XP_047725229
LinkDB
All DBs
Position
C1:complement(194422076..194492337)
Genome browser
AA seq
2284 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGP
AVGPPQPLGKELQDGAESNGGGGGGGAGAGGGPGAEPDLKNSNGNAGPRPALNNNLTEPP
GGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGL
AALQSGGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPPQAYALSSPRGGTPG
SGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLT
SPSSARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAAAASGGAQQRSHH
APMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPSSGPQQGHGYPG
QPYGSQTPQRYPMAMQGRAQSTMGGLSYAQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQ
QQQPPYSQQPPSQNPHAQPSYQQQPQSQPPQLPSSQPPYSQQPSQPPHQQSPTPYPSQQS
TTQQHPQSQPPYSQPQAQSPYQQQQPQQPASSTLSQQAAYPQPQSQQSQQTAYSQQRFPP
PQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSP
GVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAV
PGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGG
QMHTGMGSYQQNSMGSYGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGAGG
QMHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQETAV
AMHVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANNSA
GMAASPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPE
RKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATN
LNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSG
SMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFPDGSDPTF
QKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDP
YSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTGAPQPNLMPSNPDSGMY
SPSRYPPQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQQTTMYQQQQQNYKRPMDGTYGPP
AKRHEGEMYSVPYSTGQGQPQQQQLPPAQPQPASQQQAAQPSPQQDVYNQYGNTYPATAA
AATERRPAGGPQNQFPFQFGRDRVSAPPGSNAQQNMPPQMMGGPIQASAEVTQQGTMWQG
RNDMTYNYANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQPPYGPSAP
VPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGPPV
PASHIAPAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSGL
LAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPG
QRTLLDPGRFSKVSSPAPMEGEEEEDLLGPKLEEEEEEEVVENDEEMAFSSKDKAASESS
EEKLVSKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFES
KTELLPTRPHVPCPPVTRKHVTAAEGTPGTTEQEGPPPDGPPEKRITATMDDMLSTRSST
LSEEGAKSAEATKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKRC
VCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGV
SCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQD
PFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKNP
VCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQNP
PFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFL
IGQS
NT seq
6855 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccc
tcggagctgaagaaagcggagcagcagcagcgggaggaggcggggggcgaggcggcggcg
gcggcagcggccgagcgcggggaaatgaaggcagccgccgggcaggaaagcgagggcccc
gccgtggggccgccgcagccgctgggaaaggagctgcaggacggggccgagagcaatggg
ggtggcggcggcggcggagccggcgccggcggcgggcccggcgcggagccggacctgaag
aactcgaacgggaacgcgggccctaggcccgccctgaacaataacctcacggagccgccc
ggcggcggcggcggcggcagcagcgatggggtgggggcgcctcctcactcagccgcggcc
gccctgccgcccccagcctacggcttcgggcaaccctacggccggagcccgtctgccgtc
gccgccgcggcggccgccgtcttccaccaacaacatggcggacaacaaagccctggcctg
gcagcgctgcagagcggcggcggcggcgggggcctggagccctacgcggggccccagcag
aactcgcacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagc
gcctaccccccgcccccccaggcctacgcgctgagctccccgagaggtggcactccgggc
tccggcgcggcggcggccgcaggctccaagccgcctccctcctccagcgcctccgcctcc
tcgtcgtcttcgtccttcgctcagcagcgcttcggggccatggggggaggcggcccctca
gcggccggcgggggaaccccccagcccaccgccacccccaccctcaaccaactgctcacg
tcgcccagctcggcccggggctaccagggctaccccgggggcgactacggcggcgggccc
caggacgggggcgccggcaagggcccggcggacatggcctcgcagtgctggggggctgcg
gcggcagcagcggcggcggcagcagccgcctcgggaggggcccaacaaaggagccaccac
gcgcccatgagccccgggagcagcggcggcggggggcagccgctcgcccggaccccgcag
ccatccagtccaatggatcagatgggcaagatgagacctcagccatatggcgggactaac
ccatactcgcaacaacagggaccttcatcaggaccgcagcaaggacatgggtacccaggg
cagccatatgggtcccagaccccgcagcggtacccgatggccatgcagggccgggcgcag
agtaccatgggcggcctctcttatgcacagcagattcctccttatggacaacaaggcccc
agtgggtatggtcaacagggccagactccatattacaaccagcaaagtcctcacccccag
cagcagcagccaccctactcccagcagccaccatcccagaaccctcacgcccagccttcc
tatcagcagcagccgcagtctcagccgccacagctcccgtcttctcagcctccctattcc
cagcagccatcccagcctccacatcagcagtccccgactccatacccctcccagcaatcc
acgacgcagcagcacccccagagccagcccccctactcacagccacaggcacagtctccc
taccagcagcagcaacctcagcagccagcctcctcgacgctctcccagcaggctgcgtac
cctcagccccagtctcagcagtcccagcaaactgcctattcccagcagcgcttccctcca
ccgcaggagttatctcaagattcatttgggtctcaggcatcctcagccccctcaatgacc
tccagtaagggagggcaagaagatatgaacttgagtcttcagtcaagaccctcaagcttg
cctgatctgtctggttcaatagacgatctccccatggggacagaaggagctctgagccct
ggagtgagcacatcagggatttccagcagccaaggagagcagagtaatccagctcagtct
cctttctctcctcatacttcccctcacctgcctggcatccgaggcccctccccgtcccct
gttggctctcccgccagtgttgcccagtctcgctcaggaccactctcgcctgctgcagtg
ccaggcaaccagatgccacctcggccacccagtggccagtcggacagcatcatgcatcct
tccatgaatcaatcgagcattgctcaagatcgaggttacatgcagaggaacccccagatg
ccccagtacagttccccccagcccggctcggccttatctccgcgtcagccttcgggtgga
cagatgcacacaggcatgggctcctaccagcagaactccatggggagctatggtccccag
gggagtcagtacggcccacagggaggctaccccaggcagccaaactataatgccttgccc
aatgctaactaccccagtgcaggcatggctggaagcatgaaccctatgggtgctggaggt
cagatgcatgggcaacctggcatcccaccttatggcacactccctccagggagaatgagt
catgcctccatgggcaaccggccttatggccctaacatggccaatatgccacctcaggtt
gggtcagggatgtgtcccccaccagggggcatgaaccggaaaactcaagaaactgctgtc
gccatgcatgttgctgccaactctatccaaaacaggccaccaggctaccccaatatgaat
cagggaggcatgatgggaacaggacctccctatgggcaagggattaatagtatggctggc
atgatcaaccctcagggacccccgtatcccatgggtggaaccatggccaacaattcagca
gggatggcagccagcccagagatgatgggccttggggacgtcaagttaactccagccacc
aaaatgaacaacaaggcagatgggacacccaagacagaatccaaatccaagaaatccagt
tcttctactacaaccaatgagaagatcaccaagttgtatgagctgggtggtgagcctgag
aggaagatgtgggtggaccgttatctggccttcacggaggagaaggccatgggcatgaca
aatctgcctgctgtgggtaggaaacctctggacctctatcgcctctatgtgtctgtgaag
gagattggtggattgactcaggtcaacaagaacaaaaaatggcgggaacttgcgaccaac
ctcaatgtgggcacctcaagcagcgctgccagctccctgaaaaagcagtacatccagtgt
ctctatgcctttgagtgcaagattgaacggggggaagaccctcccccagacatcttcgca
gctgctgattccaagaagtcccagcccaagatccagcctccctctcctgcgggatctggg
tctatgcaggggccacagacacctcagtcaaccagcagttccatggcagaaggaggagac
ctgaagccaccaactccagcatccacaccacacagtcagatcccccccttgccaggcatg
agcaggagcaattcggttgggatccaggatgcctttcctgatggaagtgaccccacattc
cagaagcggaattccatgactccaaaccctgggtaccagcccagtatgaatacctctgac
atgatggggcgcatgtcctacgagccaaataaggatccttatggcagcatgaggaaagct
ccagggagtgatcccttcatgtcctcagggcagggccccaatggcggaatgggagacccc
tacagccgagctgccggccctgggctgggaaacgtggcgatgggacctcgacagcactat
ccctatggaggtccttatgacagagtgaggacggagcctggaataggacccgagggaaac
atgggcactggagccccacagccgaatctcatgccttccaacccagactcggggatgtat
tctcctagccgctaccccccgcagcagcagcagcagcaacaacgacatgattcctatggc
aatcagttctccactcaaggcaccccttccggcagccccttccccagccagcagaccaca
atgtatcagcagcagcagcagaattacaagcggccgatggatggcacgtacggccctcct
gccaagcggcacgaaggggagatgtacagcgtgccgtacagcacggggcaggggcagccc
caacagcagcagttgcccccagcccagccccagcctgccagccagcagcaagctgcccag
ccttcccctcagcaagatgtgtacaaccagtatggcaacacttaccccgccactgccgct
gctgctactgagcgccgaccagcaggcggcccccagaaccagtttccattccagtttggc
cgagaccgtgtctctgcaccccccggctccaatgcccagcagaacatgccaccgcaaatg
atgggtggccccatacaggcatcggctgaggttactcagcaaggcaccatgtggcaaggg
cgtaatgacatgacctacaattacgccaacaggcagagcaccggctctgccccccagggc
cccgcctatcatggtgtgaaccgaacagatgaaatgctgcacacggatcagagggccaac
catgaaggcccgtggccttcccatggcacacgtcagcccccatatggtccctctgccccc
gtgccccccatgacaaggccccctccatccaactaccagcccccgccaagcatgcagaat
cacattcctcaggtatccagccccgctcccctgccccggccaatggagaaccgcacctcc
cctagcaagtctccattcctgcactctgggatgaagatgcaaaaggcaggtcccccagtg
cctgcctcgcacatagcacctgcccctgtgcagccacccatgattcggcgggacatcacc
ttcccacctggctctgtggaagcaacacagcctgtgttgaagcagaggaggcggctcaca
atgaaagacattggaaccccggaggcatggcgggtaatgatgtccctcaagtctgggctg
ctggcagagagcacatgggcattagacaccattaacatcctgctgtatgacgacaacagc
atcatgaccttcaacctcagtcagctcccagggttgctagagctccttgtggaatatttc
cggcgttgcctcatcgagatctttggcattttaaaggagtatgaggtgggtgacccagga
cagagaacactactggaccctgggagattcagcaaggtgtctagtccagcccctatggag
ggggaggaggaggaagaccttctaggtcctaaactagaggaggaagaagaggaggaagta
gtggaaaatgatgaggagatggccttttcgagcaaggacaaggcggcctcggagagtagt
gaggagaaactggttagcaagtttgacaagctcccggtaaagatcgtgcagaagaatgac
ccgtttgtggtggactgctcagataagcttgggcgtgtgcaggagtttgacagtggcctg
ctgcactggcggattggtgggggggacaccactgagcatatccagacccactttgagagc
aagacggagctgctgcctacccggcctcatgtgccctgcccaccagtcacccggaaacac
gtcacggcggcagaggggacaccagggacaacagaacaggagggccccccacccgatggc
cctccagagaaacggatcacagccacaatggatgacatgttgtccacccggtctagcacg
ttgagcgaggagggagctaagagtgcagaggccaccaaggagagcagcaagtttccattt
ggcatcagcccggcacagagccaccggaacatcaagatcctagaggacgagccccacagt
aaagatgagaccccactgtgtacccttctggactggcaggattccctcgccaagcgctgc
gtctgtgtctccaacaccatccgaagcctgtcgttcgtgccaggcaacgactttgagatg
tccaagcacccggggctgctgctgatcctgggcaagctgatccttctgcaccacaagcac
ccagagcggaagcaggcaccactgacttacgagaaggaggaggagcaggaccaaggggtg
agctgcaacaaagtggagtggtggtgggactgcttggagatgctccgggaaaacaccttg
gtcacactcgccaacatctcggggcagttggacctctccccgtaccctgagagcatttgc
ctgcctgtcctggacggactcctacactgggcagtctgcccttccgccgaagcccaggac
cccttctccaccctgggccccaacgccgtcctctccccgcagagactggtcttggaaacc
ctcagcaaactcagcatccaggacaacaatgtggacctgatcctggccactccccccttc
agccgcctggagaagttgtatagcaccatggtgcgcttcctcagtgaccgaaagaacccg
gtgtgccgggagatggccgtggtactgctggccaatctggcgcagggcgacagcctggcg
gcccgtgccatcgcagtgcagaagggcagcatcggcaacctcctgggcttcctggaggac
agcctcgccgccacacagttccagcagagccaggccagcctgctccacatgcagaacccg
cccttcgagccaactagcgtggacatgatgcggcgggctgcccgcgcgctgctggccctg
gccaaggtggacgagaaccactcggagttcacgctgtacgagtcgcggctgttggacatc
tcggtctcaccgttgatgaactcgttggtttcacaagtcatttgtgatgtactgtttttg
attggccagtcatga
DBGET
integrated database retrieval system
