Prionailurus viverrinus (fishing cat): 125173088
Help
Entry
125173088 CDS
T09889
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pviv
Prionailurus viverrinus (fishing cat)
Pathway
pviv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125173088 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pviv03019
]
125173088 (BARD1)
04121 Ubiquitin system [BR:
pviv04121
]
125173088 (BARD1)
03036 Chromosome and associated proteins [BR:
pviv03036
]
125173088 (BARD1)
03400 DNA repair and recombination proteins [BR:
pviv03400
]
125173088 (BARD1)
Messenger RNA biogenesis [BR:
pviv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
125173088 (BARD1)
Ubiquitin system [BR:
pviv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
125173088 (BARD1)
Chromosome and associated proteins [BR:
pviv03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
125173088 (BARD1)
DNA repair and recombination proteins [BR:
pviv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
125173088 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank_4
Ank
Ank_2
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
zf-C3HC4
ANK_LRRK2
Ank_KRIT1
SICA_C
NIBRIN_BRCT_II
zf-C3HC4_2
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
125173088
NCBI-ProteinID:
XP_047727857
LinkDB
All DBs
Position
C1:17118844..17203105
Genome browser
AA seq
773 aa
AA seq
DB search
MPGNRQPRVRSGNEPRPAPAMEPEGRGAWAHSRAAFDRLEKLLRCSRCTNILREPVCLGG
CEHIFCSNCVSDCIGTGCPVCYTPAWIQDVKINRQLDSMIQLCSKLRNLLHDNKLSDLKE
DTSRQNVFNDAENKKNSIKMWFSPRSKKVRYVVTKVSVQTQPQVINDGNAQQASVYKFVS
TSPPTSVPERAKKASTRSGKKQKKKTLAEINQEWNFEAEKEDGEPDSKEEFKEKLVSFCS
QPSVIASPQTNGDIDLLASDSVTESECSRSLTEVSLPLAEQIESPETESRNEDTTPEKNA
CVNHLTSKQPLPSGHNGRPGRRSRRSSPISKRCRSSIPGTSGQQMLLSENKPLPGCSSPP
PSKRKVGDTLRRKNSNISDESMSLSPGTPPSTLNSPSYRRMMFSPSAMKLSPGSLTAVKR
NHRGETLLHIASIKGDLPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK
ALVNSTGYQNDSPLHDAAKNGHMDIVKLLLSYGASRNAVNIFGLRPVDYADGENMKSLLL
LPEESESSSTRHCSVTNTGQRRDGPLVLIGSGLSSEQQKMLSELAVILKAKKCAEFDSTV
THVIVPGDTVQSTLKCMLGILNGCWILKFEWVKACLQRKACEQEEKYEIPEGPQRSRLNK
EQLLPKLFDGCYFYFGGAFKHHPKDNLVKLVTAAGGQVLSRKPKPDSDVTQTINTVAYHA
KADSDQRFCTQYIIYEDLSNHRPERVRQGKVWMASSSWFIDCVMSFALLPLDS
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgccggggaaccggcagccaagggtccggtccgggaacgagcctcgtcccgcgcccgcc
atggagccggaggggcgcggggcctgggcccacagccgcgccgcgttcgaccggttggag
aagctgctgcgctgctcgcgttgcactaatattctgagggagcctgtgtgtttaggggga
tgtgagcacatcttctgtagtaattgtgtaagtgactgcattggaaccggatgtccagtg
tgttacaccccagcctggatacaagatgtgaagataaatagacagttggacagcatgatc
cagctttgtagtaagctccggaatttgctgcatgacaataagctatcagatttgaaagaa
gacacatctaggcaaaatgtattcaatgatgcagaaaataagaagaattcaataaaaatg
tggtttagtcctcgaagtaagaaggtcagatatgttgtgactaaagtttcagtgcaaacc
cagcctcaagtgatcaatgatgggaatgctcagcaggcctcagtgtacaaatttgtctct
acaagtcctccaacaagtgttcctgagagggctaaaaaggcttccacgaggtccggaaaa
aaacagaaaaagaaaactttagctgaaatcaaccaagaatggaatttcgaggcagaaaaa
gaagatggtgaacctgactccaaagaggaatttaaggaaaagctggtgtctttctgtagc
cagccatctgttatcgctagtcctcagacaaatggtgacatagacttactagcaagtgac
tctgtaaccgaatcggagtgttctagaagcttaactgaagtctctttaccattggctgag
caaatagagtctccagaaacagagagcaggaatgaagacacgactcccgagaagaatgct
tgtgtgaatcatcttacatctaagcagcccttgccatcaggtcataatgggcgacctgga
cgtcgcagcagacggtccagtcccatttctaagagatgcagaagcagcattcctggcacg
agtgggcagcaaatgctgctttcagaaaacaaaccactgcctggctgctcttcaccacct
ccaagcaaacgtaaagttggtgacacattaaggaggaaaaacagtaatatatcagatgaa
tccatgagcctttcaccaggtacaccaccttctacactgaatagtccaagttacagacgg
atgatgttcagcccttcagcaatgaagctgtctcccggtagccttacagctgtgaaaaga
aatcatagaggagagactttgcttcatattgcttcaattaagggcgacctaccttctgtg
gaatacctcttacaaaatggaagtgacccaaatgttaaagaccatgctggatggacacca
ttgcacgaagcctgcaaccatgggcacctgaaggtggtggaattgttgctacagcacaag
gcgttggtgaactccactgggtatcagaatgattcaccacttcatgacgctgccaagaat
gggcacatggatatagtcaagctcttactttcttatggagcctccaggaacgccgtgaac
atatttggtttgcggcctgtggattatgcagacggtgaaaatatgaagtcactattgctg
ctaccagaggagagtgaatcctcatcaactcgccattgctcagtaacaaacactggtcag
cgtagggatggacctctcgtgcttataggcagtgggctttcttcagaacagcaaaaaatg
ctcagtgagcttgcagtgattcttaaggctaaaaaatgtgctgaattcgacagtacagta
actcatgtcattgttcctggagatacagttcaaagtaccctaaaatgtatgcttgggatt
ctcaatggatgttggatcttaaaatttgaatgggtgaaagcatgtctacaaagaaaagca
tgtgaacaggaggaaaagtatgagattcctgaaggaccacagagaagcaggctcaacaaa
gaacagctgttgccaaagctgtttgatggctgctacttctattttgggggagccttcaaa
caccatccaaaggacaaccttgttaagcttgtcactgcagctgggggccaggttctcagt
agaaagcccaagccggacagcgacgtgactcagaccatcaatactgtcgcgtaccatgcg
aaagctgactccgatcagcgcttctgcacgcagtatatcatctatgaggatctgtctaac
catcgcccagagagggtgcggcagggcaaagtctggatggcttcttccagctggtttata
gattgtgtgatgtcctttgcgttgctccctcttgacagctaa
DBGET
integrated database retrieval system
