Prionailurus viverrinus (fishing cat): 125174857
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Entry
125174857 CDS
T09889
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pviv
Prionailurus viverrinus (fishing cat)
Pathway
pviv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125174857 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pviv03032
]
125174857 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
pviv03400
]
125174857 (TOPBP1)
DNA replication proteins [BR:
pviv03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
125174857 (TOPBP1)
DNA repair and recombination proteins [BR:
pviv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
125174857 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
125174857
NCBI-ProteinID:
XP_047730724
LinkDB
All DBs
Position
C2:complement(29671032..29750755)
Genome browser
AA seq
1514 aa
AA seq
DB search
MSRNDKEPFLVKFLKSSDNTECFFKALESIKEFQSEEYLQIITEEEALNMKENDRSLYIC
DPFSGNVFDHLKKLGCRIVGPQVVIFCMHHQRCVPRAEHPVFNMVMSDVTVSCTSLEKDK
REEVHKYVQMMGGRVYRDLNISVTHLIAGEVGSKKYLVAANLKKPILLPSWIETLWEKSQ
EKKIARYTDINMEDFKCPIFLGCTICVTGLCGSERKAIQRLTVKHGGQYMGQLKMNECTH
LIVQEPKGQKYECAKKWNVHCVTTQWFFDSVDKGFCQDESIYKTEPQPETKTVPDTSTPT
GQINTVDSRTLSDVSHISNINASCISESICNSVLNSKVEPTLENLENLDVSAFQAPEDLL
DGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWDKSAHRP
HVVGAKWLLECFSKGYILPEEPYIHANYQPVEIPVSDKPESQTAALKKNNSSSKKDSTPD
GKHEQADEDLLSQYVNNNTTAVEAAKSEVEPFNDSTHISLQEENQSSVTHCHPDASTITE
EGLFNQKSFLVVGFSSENESNIANVIRENAGKIVSLQSRIVADYAVVPLLGCEVEATVGE
VVTNTWLVTCIDYQTLVDPKSNPLFVPVSVMAGMTPLEDCVISFSQCAGAEKDSLIFLAK
RLGASVQEYFVRKSNAKKGMFASTHLVLKEPSGSKYEAAKKWNLPAVNISWLLETARTGK
RASESHFLIEKSTKEEQGLETEITNRVNVSPDTAEHPVTHLDTHRKTAVTPLDMNSFQSK
AFHAVISQHTKQVSVSPPVGQPLQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALETP
GGPSQQKRKLSTPLSEVIVRNLKLAVANSSRNAVALSASPQLKDAQSKKEQEEAPKPLHK
VVVCVSKKLSKKQSELNGIAASLGADYRWSFDETVTHFIYQGRPNGTNREYKSVKEKGVH
IVSEHWLLECAQEYKHLPESLYPHTYNPKMSLDISTVQDGRLCNSRLLSADSATKDDEPD
HLPVEENDIDNMTTSNKELVTSNGDGRNDSKGALTQTLEMRENFQKQLQEIMSATSIVKP
QGQRASLSRSGCNSTSSTPDSSRSARSGRSRVLEALRQSRQTVPDVNTEPSQNEQIIWDD
PTAREERARLASNLQWPSCPTQYSELQVDIKKLEDSPFQEPLHDAETAEQAVCDSGNMCV
TEAPKHPISEELETPVKDSHLIPTPQAPSIAFPLANPPVAPHPREKTITIEETHEDLKKQ
YIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPSCTHIVVGHPLRNEKYLASLAAGKW
VLHRSYLEASRTAGHFVPEEDYEWGSSSILDVLTGITVQQRRLALAAMRWRKKIQQRQES
GIVEGAFSGWKVILHLDQSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDFSKLKQD
DSGVNIAEAAAQNVYCLKTDYIADYLTQESPPQVENYCLSETISFLQNKEPGPGSSQKRK
APTEKNKLKRPRVN
NT seq
4545 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaatgacaaagaaccgtttcttgtgaagtttttaaagtcttcagacaatacc
gaatgtttttttaaagctcttgagtcaataaaagagttccagtcagaagaatatcttcag
attattacagaagaagaggcattaaacatgaaggagaatgataggtcactttatatctgt
gacccatttagtggcaatgtctttgatcacctcaaaaagcttggctgcagaattgttggc
cctcaagtagtcatattttgtatgcaccaccagcgatgtgtcccaagagccgaacatcca
gtttttaatatggttatgtctgatgtaactgtatcttgtacaagcctggaaaaagacaaa
agggaagaagttcataaatatgtacaaatgatgggtggacgcgtatacagagatcttaat
atatcagtaactcaccttattgcaggagaagttggcagcaaaaaatatttagttgctgca
aacctaaagaaacctattttgcttccttcttggattgaaacactttgggagaagtcacaa
gagaaaaaaatagccagatatactgatataaacatggaagacttcaagtgtcctattttt
cttggttgcacaatctgtgtgactggcttgtgtggctcagaaagaaaggcaattcagcga
ctcacagttaagcatggaggtcaatacatgggacaactgaaaatgaatgaatgtacacac
ctcattgtgcaagaaccgaaaggtcaaaaatatgaatgtgccaagaaatggaatgtacac
tgtgtgaccacacagtggttttttgacagtgttgacaaaggtttttgtcaggatgaatcc
atatacaagacagagcctcaaccggaaacaaagactgtacctgatacttcaactcctact
ggccagatcaacacagttgatagtcgtactctttcggatgtcagccatatttccaacatc
aatgcaagttgcataagtgaatcgatatgtaattcagttcttaatagcaaagtggagcct
acacttgaaaatctagaaaatctggatgtcagtgcatttcaagcacctgaagatttacta
gatggttgtcggatatatctttgcggttttagtggcagaaagctagataaactgagaagg
cttattaacagtggaggtggagttcgttttaatcagctcaatgaagatgtaactcatgtt
attgtgggagattatgatgatgaattgaagcagttttgggataaatcggctcacaggcct
catgtagtgggagcaaaatggttgctagagtgttttagtaaaggttatatacttcctgaa
gagccatatatccatgctaactaccaaccagtggaaattccagtttcggataaacctgaa
agtcaaacagccgctttaaaaaagaacaacagctcctccaagaaggactctactcctgat
ggaaaacatgaacaagctgatgaagatctcctctctcagtatgtaaataataacacaaca
gcggttgaagctgccaagtctgaagttgagccctttaatgactctactcatatttccctg
caagaagaaaaccagtcttctgtcactcattgccatcctgacgcttctacaattactgaa
gaaggtttatttaaccaaaagagtttccttgttgtgggttttagtagtgaaaatgaatct
aatattgcaaacgtcataagagaaaatgctggaaaaattgtctcccttcagagcagaatt
gttgctgattatgctgtggttcctctgctggggtgtgaagtggaagcaactgtaggagaa
gtcgttacaaatacgtggctggtaacttgcatagactatcagactttagttgatccgaag
tcaaatcctctcttcgtgccagtctcagtaatggcaggaatgactcctttagaggattgt
gttatttcattcagccagtgtgcaggagccgaaaaagattcgttgatattcttagcaaaa
cgccttggagcaagcgttcaagaatactttgttcgcaaatccaatgcaaagaaaggcatg
tttgccagtacacatcttgtattgaaggaaccaagtggttctaaatacgaagctgccaag
aagtggaatttaccggcagtcaacatatcatggctattggagactgctagaacgggaaag
agagcaagtgaaagccattttctgattgaaaagtcaactaaagaagaacaaggtttggaa
actgaaataacaaacagggtgaacgtaagcccagatactgcagagcatcctgtcacacac
ctggacactcacaggaaaacagccgttacacctttagatatgaacagctttcagagtaaa
gctttccatgccgtgatctcccaacacaccaaacaagtgtctgtgtccccaccagtagga
cagccgcttcagaaggaaccctccttgcatctggatacaccatcaaaatttctgtccaaa
gacaaactcttcaagccttcctttgatgtgaaggatgcacttgcagccttggaaactcca
ggaggtcccagccaacagaaaaggaaactgagtacaccactttcagaagtcattgtcaga
aacttgaaacttgctgtggcaaacagctcccgaaatgctgttgctctttctgccagccct
cagctgaaggatgcccagtccaagaaggaacaggaagaagctccaaagccacttcacaag
gtagtggtatgtgttagtaagaaactcagtaagaagcagagtgagctgaatgggattgca
gcctctctaggagcagattacagatggagttttgatgaaacggtgactcatttcatttat
caaggccgaccaaatggcactaaccgagaatataaatctgtaaaagaaaaaggagtacac
attgtttcagagcactggcttttagaatgtgcccaagagtataagcatcttcctgaatct
ctttatccacatacttataatcccaaaatgagcttggatatcagtacagtgcaagatggc
agactctgtaatagtcgactactctcagctgattcagcaacaaaggatgatgagccagat
catttgcctgtagaagaaaatgacatagacaatatgaccaccagtaataaagaattagta
acatcaaatggagatggaaggaatgactctaaaggagctctgacacagacattggagatg
agagagaactttcagaagcagctgcaggagatcatgtccgcgacgtcaatagtgaaaccc
caagggcagagggcttccctttcaagaagtggttgtaacagcacttcttcaacccctgat
agcagtcgctctgcccgcagtgggcgaagtagagtcctggaggcactgaggcagtctcgt
caaacagtacctgatgtcaacacggagccctcccagaatgaacagatcatttgggatgac
ccaacagccagggaggagagagcacggcttgccagcaatctgcagtggcctagttgtccc
acacagtattctgagcttcaggttgacattaaaaaattggaggattctcctttccaggag
cctttacatgacgcagaaactgctgaacaggctgtctgtgattccggaaacatgtgtgta
actgaagccccaaaacacccaatctctgaagaactggaaacaccagttaaagacagccac
ctgatccctacacctcaagcccccagtattgccttccccctggccaacccaccagtggct
ccacaccctagagaaaagactataacaatagaggaaactcatgaagacctaaaaaaacag
tacatatttcagttgtcatctctgaatcctcaagaacgtattgattattgtcatctgatt
gaaaaactaggtggactagtaatagagaagcagtgctttgatcccagttgtacacacatt
gttgtgggacatccacttcgaaacgagaagtatttagcttcattggcagctgggaagtgg
gtgcttcatcgctcctacctggaagcatcccggactgctgggcacttcgtgccggaagaa
gactacgaatggggaagtagttccatacttgacgttttgactggaatcactgtacagcaa
cgaagactagcacttgcagcaatgagatggagaaaaaaaatccagcaaagacaagaatcg
ggcattgttgagggggcatttagtgggtggaaggtcatcttacatcttgaccagtcccga
gaagcaggattcaaacgccttcttcagtcaggaggagcgaaggtgctacctggtcattct
gtacctctatttaaagaggccacacatctcttctctgacttcagtaaactgaaacaagat
gactcaggagttaacatagcagaggctgctgcccagaatgtgtactgcctgaaaacagat
tacattgctgattatctgacgcaggaatcccctcctcaagtagaaaactactgtctatca
gaaactatttcatttcttcagaataaggaacctgggcctggatcatcacagaagaggaaa
gctcctacagagaaaaacaaactcaaacgacctagagtaaactaa
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integrated database retrieval system
