Prionailurus viverrinus (fishing cat): 125176181
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Entry
125176181 CDS
T09889
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pviv
Prionailurus viverrinus (fishing cat)
Pathway
pviv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125176181 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pviv03021
]
125176181 (PCF11)
03019 Messenger RNA biogenesis [BR:
pviv03019
]
125176181 (PCF11)
Transcription machinery [BR:
pviv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125176181 (PCF11)
Messenger RNA biogenesis [BR:
pviv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125176181 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
125176181
NCBI-ProteinID:
XP_047733141
LinkDB
All DBs
Position
D1:complement(49477905..49501387)
Genome browser
AA seq
1686 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVPQIPPLAVKPPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLNQSDIKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESARVSDMSKRDPRLKKHLQDKTDSKDDDV
KDKRKTAEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPSSTPKAGKIRQSGVKQSHMEEFTLPSR
EERNAKRSNKQDIRDPRRIKKTEEERPQEAANQHSTKSGTEPKENIENWQSSKSTKRWKS
GWEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRTPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMI
FEGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPAGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE
GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQP
GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQSTRFDNHPSQRLESVSFN
QSGPYNDPPGNAFNAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYF
DEKNLQSSQFGNFGNLPAPITVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQ
NPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPAPEEEEDQ
NEDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQN
RTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEF
QSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFD
CTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPTEIKTES
DTVESV
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcaatcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcccgaagagccttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaattgttcctgatatacagaagaatcttactcaa
gaacaactaataaggcagcagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacaactggcagtttctcttagcgtt
cagcaggagacatccaacttaggtcctggatctgcaccatccaaattacatgttccacaa
attccccctttggctgttaaacctccccatcaagttcctgtgcaaccagagaaaagccgt
ccaggtccatccttacaaattcaggatttgaaaggaactaatcgggatccccgtcttaat
aggatgagtcaacattcttcgcatggaaaagatcagagtcacaggaaagaattcctaatg
aacacattgaaccaatctgatattaagacaagtaaaactgtaccctctgaaaaactaaat
tcatccaagcaagagaaaagcaaatcaggtgaaaaaataaccaagaaagaacttgaccaa
ttagattctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaagacttgaaaaatcaagaatctgaaagtgcaagggtgtcggatatgagcaag
agagatcctaggttaaaaaaacatcttcaggataagactgatagcaaagatgatgatgta
aaagacaagagaaaaactgcagaaaaaaaggacaaagatgagcacatgaaatcatctgaa
caccgactcgttggaagtcgaaataaaatcatcaatggcatcgtacaaaagcaggataca
ataacggaagaatcagaaaaacaagggacaaaaccagggagatcaagtactagaaagcgg
tcaagatcgcgatcacccaagtctcgatcaccaattatacattctccaaagagaagagat
aggcggtcacccaaacgaaggcagaggagtatgtctccaagttccacacccaaagctgga
aagattcgccaatcaggagttaagcaatcacatatggaagagtttacgctaccttccagg
gaagagcgaaatgctaaaaggagtaataaacaagatattcgagatccaaggcgaataaaa
aagactgaagaggaacgaccacaagaagctgcgaatcagcattctacaaaatccggcact
gaaccaaaggagaatatagaaaattggcaaagttccaagtctaccaaaagatggaaatct
ggttgggaagaaaataaaagcttacaacagggtgatgaacatagtaaatctcctcatcta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgaaccccaaagcag
cagcatcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
accgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaagagcagaggtcaccattcaatgat
cgttttccacttaagcgacctagatacgaagattcagataaaccatttgtagatagccca
gcatcaagatttgccggcctcgatacaaatcagcgacttacagctttagctgaagacaga
ccattatttgatggacctagtaggccatcagtaacaagagatggcccaaccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
cggtttgatgggtcaccaggacaaatggggggaggtggccctttgagatttgaaggacca
caaggtcagctaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtaggg
acgcctctgcggtttgaggggccaattggtcaggcaggaggaggaggttttcggtttgaa
ggttcacctggtctgaggtttgagggatctgcaggtggtttgcgatttgagggaccaggg
ggccagcctgtgggtggtctcaggtttgagggacatcggggtcaacctgtgggtggtcta
cggtttgagggacctcatggtcagcctgtgggtggacttagatttgataatccccgaggt
cagcctgtaggtggacttagatttgaagggggtcatggtccatcaggggctgcaattagg
tttgatggacctcatggtcagccagcaggtgggatcagatttgagggccctttgctacag
cagggagttggaatgaggtttgagggtccccatggtcagtcagtggctggtttgaggttt
gaaggacaacataatcaacttggtgggaaccttaggtttgagggtccacatggtcagcca
ggggttgggatcaggtttgaaggaccgttagtccaacaaggaggtggaatgaggtttgag
ggtccttctgtaccaggaggtggcctgagaattgaagggcctctaggtcaaggtggtcca
agatttgaaggttgtcatgctttaaggtttgatgggcagccaggtcagccatcactcttg
ccaagatttgatggattacatgggcagccaggtcctagatttgaaagaactggtcagcca
ggcccacagagatttgatggaccacctggacagcaggttcaaccaagatttgatggtgta
cctcaaagatttgatggcccacaacaccagcaagcatcaaggtttgatattcctcttggt
cttcaaagcacacgatttgacaatcatccttcacaaaggcttgaatcagtatctttcaat
cagtctggtccatataatgatccacctggcaatgcttttaatgccccatcccaaggacta
cagttccaaagacatgaacaaatgtttgattcacctcaaggaccaaattttaatggacca
catggtcctggaaaccagagtttctcgaatccccttaacagagcttctggacactatttt
gatgaaaagaatctccagagttcccaatttggaaactttggcaatttacctgctccaata
acagtaggaaatattcaggcgtctcaacaggttcttactggtgttgctcagccagtagca
tttggccaaggacaacaatttttaccagttcatccacaaaatcctggagcatttgttcag
aatccttcaggagcccttccaaaggcatatcctgataatcatctcagtcaggtggatgta
aatgaattattttcaaaactgctaaaaacaggaattctcaaattgtcccagcctgattca
gctacaacacaagtaaatgaagttgctgctcagcctgcccctgaagaggaggaagatcaa
aatgaagatcaagatgttccagatcttaccaattttacaattgaagaactgaaacaacgt
tatgatagcgttataaatcgactgtacactggtattcagtgttactcttgtggaatgagg
tttacaacatcacagacagatgtatatgcagaccacttggactggcattatcggcaaaac
agaactgaaaaagatgttagcagaaaagtcactcatagacgttggtactacagtttaaca
gactggatagaatttgaggaaatagctgatttggaagaacgtgcaaagagccagtttttt
gaaaaggtgcatgaagaagttgtgctcaaaactcaggaggctgcaaaagaaaaggagttc
caaagtgtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaagaacaa
tttgaacaatactgggatgaagaagaggaggaatggcatttaaaaaatgctattagagta
gatggaaagatttatcatccatcatgttacgaggattatcaaaatacatcttcatttgat
tgtacaccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacatt
gtcaaaaatgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacgaattgat
accccaccagcttgtacagaggaaagcatagcaacacccactgaaattaaaacagaaagt
gatacagtcgagtcagtttaa
DBGET
integrated database retrieval system
