Pseudescherichia vulneris: LMA04_01340
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Entry
LMA04_01340 CDS
T08658
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pvj
Pseudescherichia vulneris
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvj03016
]
LMA04_01340
Enzymes [BR:
pvj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LMA04_01340
Transfer RNA biogenesis [BR:
pvj03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LMA04_01340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
ODP
PilZ
Motif
Other DBs
NCBI-ProteinID:
WAH52731
LinkDB
All DBs
Position
complement(238173..240107)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGVVKGTEKGFGFLEVDGQKSYFIPPPQMKKVMHGDRV
IAVIHSDKDRESAEPEELVEPFLSRFVGKVHRKDDRLSIVPDHPLLKEAIPCRAMRGVEH
DFKEGDWAVAEMRRHPLKGDRGFYAELTQFITFGDDHFVPWWVTLARHNLEKEAPNGVAT
EMLDEGLERVDLTALDFVTIDSASTEDMDDALFVEALADDKLQLTVAIADPTAWIAEGSK
LDNIAKVRAFTNYLPGFNIPMLPRELSDDLCSLRAQEVRPVLACRMIVAADGTIEEDITF
FAATIESKAKLVYDEVSDWLEGKAGWQPPSEAIANQIRLLHRVCLSRSEWRTQHALVFKD
RPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMISANICAARVLRDKLGFGIYNIHLGID
PANGEALAALLKTHGMHVDAEEVLTLEGFCKLRRELDAQPSGFLDSRIRRFQSFAEISTE
PGPHFGLGLDAYATWTSPIRKYGDMINHRLLKAIIKNETIARPQDDATVQMAERRRLNRM
AERDVGDWLYARFLKDKAATDVRFAAEIIDISRGGMRVRLVDNGAVAFIPAPFLHAVRDE
MVCSQESGTVTIKGETVYKVSDVIDVTIAEVRMETRSVIARPLA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgttccaggacaacccgctgctagcgcagcttaaacagcaactgcattcccaaacgccg
cgtgcggaaggcgtcgtaaaaggcaccgaaaaaggctttggcttccttgaagtcgacgga
cagaaaagctatttcattccgccgccgcagatgaaaaaggtaatgcatggcgaccgcgtg
atcgccgtgatccacagtgacaaagatcgtgaatccgccgagccggaagagcttgtcgag
ccgtttctgtcacgctttgtcggtaaagtacacagaaaagacgatcgtctctctattgta
ccggatcatccgttgctgaaagaggccattccctgccgggccatgcgcggcgtggagcat
gattttaaagagggcgactgggcggtagccgaaatgcgtcgccatccgctgaagggcgat
cgcggcttctacgccgagctgacgcagtttattacctttggcgatgaccacttcgttccg
tggtgggtgacccttgcccgtcacaatctggaaaaagaggcgcctaacggtgtggcaacc
gagatgctggatgaggggctggagcgtgtcgacctgaccgcgctggacttcgtcaccatc
gacagcgccagcactgaagatatggatgatgccctgtttgtcgaagcgctggctgacgat
aagctgcagctgaccgtggccattgccgatcccaccgcgtggatcgctgagggcagcaag
ctggacaatatcgccaaagtgcgcgctttcactaactacctgccgggttttaacatcccg
atgctgccgcgcgagctgtcagacgatctctgctcgctgcgcgcgcaggaagtccgtccc
gtgctggcctgccgcatgatcgttgccgccgacggcaccattgaagaggatatcaccttc
ttcgcggcgaccattgaatccaaagccaagctggtctatgacgaggtctccgactggctg
gaaggcaaagcgggctggcagccaccgtcagaagcgattgccaaccagatccgcctcctg
caccgcgtctgcctgagccgcagcgagtggcgtacccagcatgcgctggtgtttaaggat
cgcccggactaccgcttcgtgctgggtgaaaaaggcgaggtgctggatattgtggccgag
ccgcgccgcattgctaaccgcatcgtggaggagtcgatgatctccgccaacatctgtgcg
gcacgcgtcctgcgcgataagcttgggtttggtatctacaacatccatctggggatcgac
ccggcgaatggcgaagcgctggccgcgctgctgaagacgcacggtatgcacgttgatgct
gaagaggtgctgactctcgaaggcttctgcaagctacgccgtgaactggatgcccagccg
tcaggtttcctcgacagccgcatccgccgcttccagtcctttgccgagattagcaccgag
ccgggcccgcacttcggtcttggcctggatgcctatgccacctggacgtcaccgattcgt
aagtatggcgatatgatcaaccatcgcctgctgaaagcgattatcaagaacgaaaccatt
gcccgtccgcaggatgatgcaacggtacaaatggctgaacgtcgtcggctcaaccgtatg
gcggagcgtgacgttggcgactggctgtatgcgcgcttcctgaaagataaagctgcaacg
gatgtccgttttgccgctgagattatcgatatcagccgcggcggtatgcgcgtacgcctg
gtggataacggtgcggtagcctttattccggcaccgttcctgcacgccgtacgcgatgag
atggtgtgtagccaggagagcggcacggtaacgatcaaaggcgaaaccgtgtataaagtt
agcgatgtcattgacgtgactatcgctgaagtacgcatggagacgcgcagcgttattgcc
cgcccgctggcttaa
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