Pseudescherichia vulneris: LMA04_01845
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Entry
LMA04_01845 CDS
T08658
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pvj
Pseudescherichia vulneris
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvj03019
]
LMA04_01845 (hrpA)
Enzymes [BR:
pvj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LMA04_01845 (hrpA)
Messenger RNA biogenesis [BR:
pvj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LMA04_01845 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
T2SSE
nSTAND3
NACHT
ResIII
PhoH
AAA_23
NTPase_1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WAH52825
LinkDB
All DBs
Position
333302..337204
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLSFADLYTHLDNLMLRDRQRFARRLHGVKKVKNPEAQQAILQEMAQEIAQAATT
VERRAAARPEISYPDNLPVSQKKQDILEAIRDNQVTIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELKSEPGGAIGYKVRFSDHVSENTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYFKELLPKRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRESPGDILIFMSGE
REIRDTADALNKLNLRHTEVLPLYARLSNSEQNRVFQPHGGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDRRNIQDGVRLLEELGAITTDEN
QTAYKLTAQGRQLSQLPVDPRLARMVLEAQKLGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIAVNSEPAEYREIHIALLTGLLSHIGMKDADKQEFTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLLKRSYSEPHWERAQGAVMATE
KVTVYGLPVVAARKVNYSQIDPALSRELFIRHALVEGDWQTRHAFFRENLKLRTEIEELE
HKSRRRDILVDDDTLFEFYDQRISVDAISARHFDSWWKKASRETPDLLNFEKSMLIKEGA
EQVSKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELIIALIKSLPKPIRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDRDAW
QWEQVPDHLKISFRVVDDKNRKLQEGRDLTALKESLKGKVQETLSAVADDGIEQSGLHIW
SFGTLAQSYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQEQAMWRGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCIACGVDKLIHEAGGPVWTEEGFAALHEK
VRAELNETVVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDVKAQMSGLVYRGFVTG
NGFTRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVEQVQQAWQQWLNKLPPARRNDED
VQAIRWMIEELRVSFFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacaacagaaactgtccttcgccgacctctacactcacctcgacaatcttatg
ctccgcgaccggcagcgctttgcccgtcgtctacatggggtgaagaaggttaaaaatcct
gaagctcagcaggctatcctgcaggagatggcgcaggagatcgcccaggctgcgactact
gttgagcggcgggcagcggcacgcccggagattagctatccggataacttgccggttagc
cagaagaagcaggatattctggaggcaatccgcgacaaccaggtgacgattgtcgccggt
gaaaccggttcgggtaaaaccacccagctaccaaaaatctgtatggagctagggcgcggc
gttaagggcctgattggccatacccagccgcgacgtctggcggcgcgaaccgtagcgaac
cgtattgccgaggagctgaaaagcgagccgggcggtgctatcggttataaggtgcgcttt
agcgatcacgtcagcgagaacaccatggtcaagctaatgaccgatggtattctgctggcc
gagatccagcaggaccgcctgctgatgcagtacgacaccatcatcatcgatgaggcgcat
gagcgcagcctcaacatcgattttctgctgggctacttcaaagagctgctgccgaagcga
ccggatctgaagatcatcatcacctcggcaaccatcgacccggaacgcttttcgcgtcac
tttaacaacgcgccgattattgaagtctcgggccgcacctatccggtggaggtgcgctat
cgccccatcgtcgaggaggcagatgataccgagcgcgatcagctgcaggcgatttttgac
gccgtcgacgagctgggacgcgaaagtcccggcgatattctgatctttatgagcggcgag
cgtgaaattcgcgacaccgccgacgcgcttaacaagctcaacctgcgccataccgaggtg
ctgccgctctatgcgcgtctgtcgaacagcgagcagaaccgcgtcttccagccccacggc
ggtcggcgcatcgtgctggcgaccaacgtggcggaaacctcgcttaccgtgccgggcatc
aagtatgtgatcgatccgggcacggcgcgtatcagccgctacagctaccgcaccaaggta
cagcgtctgccgattgaaccggtgtcgcaggcctcggccaaccagcgtaaaggccgctgc
ggccgtgtgtcggaggggatctgtatccgtctctactccgaggacgatttcctgtcgcgt
ccggagtttaccgatccagagatcctgcgtaccaacctcgcgtcggtcattttacagatg
accgccctcggactgggcgatattgcggcgttcccgtttgtcgaagcgccggaccggcgc
aacatccaggacggcgtgcgcctgctggaggagctgggggccatcaccaccgatgagaac
cagaccgcctacaagctcaccgcccaggggcgtcagctgtcgcagctgccggtggacccg
cgcctcgctcggatggtgctggaggcgcagaagctgggctgcgtgcgcgaagcgatgatc
attacctccgcgctctcgattcaggatccgcgtgagcggccgatggacaagcagcaggcg
tccgatgagaaacatcgccgcttccacgacaaagagtctgacttcctcgcctttgtaaac
ctgtggaactaccttggcgagcagcagaaagcgctgtcgtcgaaccagttccgtcgtctc
tgccgtaccgattacctcaactacctgcgggtacgcgagtggcaggatatctatacccag
ctgcgccaggtggtgaaagagttaggtattgcggttaatagcgagccagcagagtaccgc
gagatccatatcgcgctgcttaccggtctgctatcgcatatcggcatgaaggatgccgac
aagcaggagtttaccggcgcgcgcaacgctcgcttctccatcttccccggctccggcctg
tttaaaaagccgccaaagtggacgatggtcgccgagctggtcgagaccagccgcctgtgg
gggcgcatcgctgcccgcatcgatcccgagtgggtcgaaccggtggcccagcatctgctc
aagcgctcgtacagcgagccgcactgggagcgcgcccagggtgcggtgatggcgacggag
aaggtcaccgtttacggcctgccggtggtggccgcgcgtaaggttaactacagccagatc
gatccggcgctcagccgcgagctgtttatccgtcatgcgctggtggagggcgactggcag
acccggcacgctttcttccgcgagaacctgaagctgcgcaccgagatcgaagagctggag
cataagtcgcgccgccgtgacattctggtggatgacgacacgctgtttgagttttacgat
cagcgtatcagcgtcgacgccatctccgcccgccattttgacagctggtggaaaaaggcc
agccgcgagacgccggatctgctcaattttgaaaagagcatgctgataaaagagggcgcg
gagcaggtcagcaagctggattaccccaacttctggcatcagggtaacctgaagctgcgg
ctgagctaccagtttgagccaggcgcagacgctgatggcgtgacggtgcacattccgctg
ccgctgctgaaccaggtggaggagagcgggtttgagtggcagatacctggcctgcgccgg
gagctgattatcgccctgatcaagtcgctgccgaaaccgattcgccgtaactttgtgccc
gcgcccaactacgccgaggcgtttctgggccgcgtcacgccgcttgagctgcccctgctg
gatgcgctggagcgtgagctgcgtcgcatgaccggtgtcaccgtcgatcgtgacgcgtgg
cagtgggagcaggtgcccgatcacctgaagatcagcttccgcgtggtagatgataaaaac
cgcaagctgcaagaggggcgtgacctgacggcgctgaaggagagcctgaagggcaaagtg
caggagacgctctcggcggtagccgatgacggcatcgagcagagcgggctgcatatctgg
agtttcggcaccctcgcccagagctatgagcagaagcgtggcaactataaggtgaaggcc
tggccagcgctagtggacgagcgcgacagcgtggcgatcaaactgtttgataacccgctg
gagcaagagcaggccatgtggcgcggcctgcgccgactgctgctgctcaacatcccgtcg
ccgattaagtatctgcacgagaagctgcccaacaaggccaagctgggactctactttaac
ccctatggcaaggtactggatctgatcgacgactgcatcgcctgcggcgtggataagctg
atccacgaggcgggtggtccggtgtggacggaggagggtttcgccgcgctgcatgagaag
gtgcgcgccgagctgaacgagacggtggtggagattgccaaacaggtagagcagatcctg
acggcggtgttcaatatcaacaagcgtctgaaggggcgcgtagatatgactatggcgctg
gggctgtcggatgtgaaagcgcagatgtcaggtctggtctatcgcggctttgtcaccggc
aacggttttacccgcctgggtgataccctgcgttatctgcaggccatcgaaaaacggctg
gagaagctggcggtggatccgcatcgcgaccgcgcccagatgctgaaggtggagcaggtt
cagcaggcgtggcagcagtggttgaacaagctgccgcccgcccgccgcaacgatgaggac
gtgcaggcgatccgctggatgatcgaggagctgcgggtgagcttctttgcccagcagctg
gggaccccgtatccaatatcagacaagcgtatcttacaggcgatggagcagatctccggc
taa
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