Pseudescherichia vulneris: LMA04_04085
Help
Entry
LMA04_04085 CDS
T08658
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pvj
Pseudescherichia vulneris
Pathway
pvj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LMA04_04085 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvj03400
]
LMA04_04085 (mfd)
Enzymes [BR:
pvj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMA04_04085 (mfd)
DNA repair and recombination proteins [BR:
pvj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LMA04_04085 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
DUF488
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WAH53235
LinkDB
All DBs
Position
814267..817713
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPVKAGDQRQLGELTGSACATEVAEIVERHAGPVVLIAPDMQNALRLHDEIR
QFTDSLVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIMPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRTQLDTAGYRHVDQVMEHGEYATRGALLDLYPMGSTQPY
RIDFFDDEIDSLRLFDPDTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVINTGDLDASAVRFQSETQ
ARYENRGVDPMRPLLPPETLWLRSDELFAELKRWPRIQLKTEQLAEKAANTNLGYRTLPD
LAVQAQQKSPLDSLRKFLESFTGPVVFSVESEGRREALGELLARIKVAPKRILRLDEATD
SGRYLLIGAAERGFIDTLRNRALICESDLLGERVARRRQDNRRTINPDTLIRNLAELHPG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANEAKLYVPVSSLHLISRYAGGAEENA
PLHKLGSDAWTRARQKAAEKVRDVAAELLDVYAQRAAKTGFAFKHDKEQYQLFCDAFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIELLSRFRSAKEQTQVLADAAEGKVDILIGTHKLLQSDLKW
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAMLREILRGGQVYYLYNDVENIQKAAQRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPPPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPALLPDDYIPDV
NTRLSFYKRVASAKSSNELEEIKVELIDRFGLLPDPARTLLEVARLRQQAQKLGIRKLES
NDKGGAIEFAEKNHVNPAWLIGLLQKQPQNFRLDGPTRLKFMQELGERKTRMEWVSNFMK
ELAENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaataccgttactcccttcccgtgaaagcgggcgaccagcgccaactgggt
gagcttacaggcagcgcctgtgccacagaagtggcagaaatcgttgagcgtcacgcaggc
ccggtggtgctgattgcacccgatatgcaaaacgcgctgcgcctgcatgacgagatccgt
cagtttaccgacagcctggtgatgaacctcgccgactgggagacgctgccctacgacagt
ttctccccgcaccaggagatcatctcctcccggctctcaacgctctatcagctgccctct
atgcagcgtggcgtgctgattatgccggtgaacacgctgatgcagcgtgtctgcccgcac
agctatctgcacggccatgcgctggtgatgaaaaaggggcagcgcctctcccgcgatgcc
ctgcgcacccagctggataccgctggctaccgccacgttgatcaggtcatggagcacggc
gaatatgctacccgcggcgcgctgctggatctctacccgatgggcagcacccagccctac
cgcatcgacttctttgatgacgaaattgatagcctgcggctgttcgaccccgatactcaa
cgcacgctggaagaggtagaggcgattaacctcctgcctgcccacgagttcccaaccgac
aaggcggctatcgagctgttccgcagccagtggcgcgacacgtttgaggtgaaacgcgac
gccgagcatatctaccagcaggtgagcaaaggcaccctgccggcggggatcgagtactgg
cagccgctcttcttcagcgagccgctgccgccgctgttcagctacttcccggccaatacg
ctggtgattaataccggcgatctcgatgccagcgcggtgcgtttccagagcgaaacccag
gcccgctacgagaaccgcggcgtcgatccgatgcggcctctgctgccgccggagacgctg
tggctacgcagcgacgaactgtttgccgagctgaaacgctggccgcgcattcagctgaaa
accgagcagctggcagagaaagccgccaataccaatctcggctaccggacgctgccggat
ctggccgttcaggcgcagcagaaatcgccgctggatagcctgcgcaagttcctcgaatcc
tttaccggcccggtggtcttctcagttgagagcgaaggccgccgtgaggcgctgggggaa
ctgctggcgcgtatcaaagtcgctccgaagcggatcctgcgtcttgatgaggccaccgac
agcgggcgctacctgctgatcggcgcagccgagcgcgggtttattgataccctacgcaac
cgggcgctgatctgcgagagcgatctgctgggcgagcgcgttgcgcgccgacgtcaggac
aatcgccgtactatcaacccggatacgctgatccgcaaccttgccgaattgcaccccggc
cagccggtggtacacctggagcacggcgtcgggcgctatgcgggcatgaccaccctcgaa
gcgggcgggattaaaggtgagtacctgatgctgacctacgccaacgaggccaaactctac
gtcccggtgtcgtccctgcacctgattagccgctacgcgggcggcgcggaggagaatgca
cctctgcataaactgggcagcgatgcctggacgcgggcgcggcagaaagcggcagaaaaa
gtgcgcgacgtggccgccgaactgctggacgtctatgcccagcgcgcggccaaaaccggc
tttgcctttaagcatgacaaggagcagtaccagctcttctgcgatgccttcccgtttgaa
accacgccggatcaggcccaggcgatcaacgccgtgctcagcgacatgtgtcagccgctg
gcgatggaccggctggtgtgcggcgacgtgggcttcggtaaaactgaagtggcgatgcgc
gccgccttccttgcggtagagaaccacaagcaggtggcggtgctggtgccgacgaccctg
ctggcccagcagcactacgacaacttccgcgatcgcttcgccaactggccggtacgtatc
gaactgctgtcccgcttccgtagcgctaaagagcagacccaggtgctggccgacgcagca
gagggcaaggtcgacatcttgatcggcacccacaagctgctgcaaagcgatctgaagtgg
cgcgatctcggcctgctgatcgtcgacgaggagcaccgcttcggggtgcgccacaaggag
cgcatcaaggcgatgcgtgccgacgtcgatatcctgacgctgaccgccacgccgatcccg
cgtaccctgaatatggccatgagcggcatgcgcgatctgtctattatcgccacgccgccg
gcgcgtcgtctggccgtgaaaaccttcgtgcgcgagtacgatagcctggtagtgcgtgag
gcgatgctgcgtgagatcctgcgcgggggccaggtctactacctctataacgacgtggag
aatatccagaaggcagcccagcggctggcggagctggtgccggaggcgcgaattgccatc
ggccacggccagatgcgcgagcgcgagctggagcgggtgatgaacgatttccatcaccag
cgctttaacgtgctggtctgtaccaccatcattgaaaccgggatcgacatccctactgcc
aacaccattatcattgagcgggcggaccacttcggccttgcccagctgcatcagctccgt
ggccgcgtcgggcgttcccatcaccaggcctacgcctggctgctgaccccgcccccgaag
gcgatgaccaccgacgcccagaagcgtctggaagccatcgcctcgctggaggatctgggc
gcaggctttgcgctggctactcatgatcttgagatccgcggcgcgggcgaactgctcggg
gaagatcagagcggctctatggagaccatcggcttctcgctctatatggagctgctggag
aacgctgtcgacgcgctgaaggccgggcgcgagccgtcgctggaggatctcaccagccag
cagaccgaagtggagctgcggatgcctgccctgctgccggatgattacattccggacgtc
aatacccgtctgtcgttctacaaacgcgttgccagcgccaagagcagtaacgagctggag
gagatcaaggtcgagctgatcgatcgctttggcctgctgcccgatccggcccgcacgctg
cttgaggtagcccgactgcgtcagcaggcgcagaagctggggatccgcaagctggagagt
aacgataaaggcggcgcgattgagtttgccgagaaaaaccacgtgaatccggcctggctt
attggcctgctgcagaagcagccgcagaacttccgcctcgacggccctacccggctgaag
tttatgcaggagctgggcgagcgcaaaacccgcatggagtgggtcagtaactttatgaag
gagctggcagagaacgccatcgcctga
DBGET
integrated database retrieval system
