Pseudescherichia vulneris: LMA04_05705
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Entry
LMA04_05705 CDS
T08658
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pvj
Pseudescherichia vulneris
Pathway
pvj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMA04_05705 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvj03019
]
LMA04_05705 (rhlE)
Enzymes [BR:
pvj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMA04_05705 (rhlE)
Messenger RNA biogenesis [BR:
pvj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LMA04_05705 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
DUF6482
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WAH53540
LinkDB
All DBs
Position
complement(1166932..1168293)
Genome browser
AA seq
453 aa
AA seq
DB search
MSFEALGLNPEILRAVAEQGYREPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL
QRLITSEPHAKGRRPVRALILTPTRELAAQVGENVREYSQYLNVRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDGIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKTLAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
ERLLKKEIPRIALPGYEPDASIKAEPIQNGRQQRGGGGGRGQGGGRGQQQPRRSEGRSEG
GAPKSSQPRRSGDAKPAGEQARRRRPRKPAASQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaagcactgggtttaaaccctgagatcctgcgcgccgttgccgagcagggc
taccgcgaacctacccctattcagcagcaggcgatcccggctgtgctgcaggggcgcgac
ctgatggccagcgcccagaccggtaccggtaaaaccgcgggctttaccctgccgctgtta
cagcgtcttattaccagcgagccccatgccaaagggcgtcgcccggttcgggcgctgatc
ctcaccccaacccgcgaactggcggctcaggtaggtgagaacgttcgtgagtatagtcag
tacctcaacgtgcgttcgctggtggttttcggcggcgtgagtattaacccacagatgatg
aagctgcgcggcggcgtggatgtgctggtagccaccccaggccgtctgctggatctggag
caccagaacgccgtgaagctggacgggattgagatcctggtgctggacgaagccgaccgc
atgctggacatgggctttatccacgacatccgccgcgtgctggctaagctgccggccaag
cgccagaacctgctcttctccgccaccttctcggatgagatcaaaaccctggcagagaag
ctgctgcacaacccgctggagattgaagtggcgcgccgcaacaccgcctccgagcaggtg
acccagcatgtgcactttgttgataagaaacgcaagcgtgagctgctgtcgcagatgatc
ggcgagggcaactggcagcaggtgctggtctttacccgcaccaagcacggcgcgaaccac
ctggcggagcagctgaataaagacggcatccgcagcgccgctattcacggtaacaagagc
cagggcgcgcgtacccgggcgctggccgattttaaatccggcgacatccgcgtgctggtg
gcaaccgacattgctgcccgtggcctggatattgaagagctgccgcacgtggttaactac
gagctgccgaacgtgccggaggactacgtgcaccgcatcggtcgtaccggccgtgcagcg
gccaccggcgaagcgctgtcgctggtctgcgtcgacgagcacaagctgctgcgcgacatc
gagcgcctgctgaaaaaagagatcccacgcattgctctgccgggctatgagccggacgcc
tctatcaaagccgagccgatccagaacggtcgccagcagcgtggcggcggcggtggacgc
gggcagggcggcggtcgtggtcagcagcagccgcgccgtagcgaaggtcgcagcgaaggc
ggggcgccgaaatcaagccagccgcgccgcagcggcgatgcgaaacccgccggggagcag
gcgcgccgtcgccgcccgcgcaagcccgcggcatcgcagtaa
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