Pseudescherichia vulneris: LMA04_06140
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Entry
LMA04_06140 CDS
T08658
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
pvj
Pseudescherichia vulneris
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvj03400
]
LMA04_06140 (phrB)
Enzymes [BR:
pvj01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
LMA04_06140 (phrB)
DNA repair and recombination proteins [BR:
pvj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
LMA04_06140 (phrB)
Prokaryotic type
LMA04_06140 (phrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
SepSecS
Motif
Other DBs
NCBI-ProteinID:
WAH53616
LinkDB
All DBs
Position
complement(1250632..1252050)
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AA seq
472 aa
AA seq
DB search
MSTHLVWFRADLRVKDNLALAAACRNRHAKVLALFISTPKQWEKHAMAARQAAFMQSHLH
SLQHALAEKGIPLLFVEVDDFNASVEAVKEVCEEHDVTHLFYNYQYEINERQRDAAVEQA
LPEVTCQGLDDSVMLPPGSVMTGDRQMYKVFTPYKNAFLRRLREDLPECVPAPALREGGA
LSDTLAPLTIGYPQQAFDPSLFPATEQAAVERLREFCRNEVSEYETRRDFPALDATSRLS
ACLALGVLSPRQCLHRLLAEQPDALNGGAGAFWLNELIWRDFYRHLMTWYPDLCKHRPFI
PWTERVQWQRDPGHLQAWQTGRTGYPIVDAAMRQINNTGWMHNRLRMITASFLVKDLLID
WRIGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKHGEFIRQW
LPELAEVPAASLHDPWGWADKQGVTLDYPRPVVDHKQARTATLAAYEAARKS
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccatctggtctggtttcgcgcggatcttcgcgtgaaggataaccttgccctc
gccgctgcttgccgcaatcgccacgcaaaggtattggcgctctttatctctacgccgaaa
cagtgggaaaagcatgctatggcggcgcggcaggcggcgtttatgcagtctcatctgcac
agtcttcaacatgcgctggcagaaaaagggatcccgttgctgttcgttgaggtggatgat
ttcaacgccagcgtagaggcagtaaaagaggtgtgtgaagagcacgacgttacgcacctg
ttctacaactatcagtacgagatcaacgaacgtcagcgcgatgctgccgttgagcaggcc
ttgccggaggtgacctgccaggggctggatgacagcgtcatgcttccccccggcagcgtg
atgaccggcgatcggcagatgtataaagtctttaccccgtataaaaacgcgtttctgcgt
cggctcagggaggatctgcctgagtgcgtacctgcgcctgccctgcgtgagggtggggcg
ctgagcgacacgctggcgccgctgacgatcggctatccgcagcaggcgttcgatcccagc
ctctttccggcaacggagcaggcggcggttgagcggctgcgcgaattttgccgcaacgaa
gtcagcgagtatgaaacccggcgcgattttcccgcgctcgacgccaccagtcggctttcg
gcctgcctggcgctgggggtgctctctccgcgccagtgcctgcaccggctgctggcggag
cagcccgatgccctgaacggcggcgcaggtgcgttctggttgaatgagcttatctggcgc
gacttctatcgccatctgatgacgtggtaccccgatctctgtaagcatcggccctttatt
ccctggaccgaacgcgtccagtggcaacgtgacccgggacatctgcaggcctggcagacg
ggacgcaccggctaccccattgtcgatgcggcgatgcggcagataaataataccgggtgg
atgcataaccgtctgcgaatgattaccgccagcttcctggtaaaagacttactgatcgac
tggcgcatcggagagcgctattttatctctcagcttatcgatggcgatctggccgctaac
aacggcggctggcagtgggcggcgtcaacgggtaccgatgccgcgccctattttcgcatc
tttaaccccaccacccagggcgaaaaatttgataagcacggcgaatttatccgtcagtgg
ctgcccgagctggcagaggtgcctgcggcgtcgctgcacgatccctggggatgggcggat
aagcagggcgtgacgctggactatccccgcccggtggtcgatcataaacaggcccgtacg
gccacgctggccgcgtatgaagccgcaagaaaatcgtag
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