Pseudescherichia vulneris: LMA04_08175
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Entry
LMA04_08175 CDS
T08658
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pvj
Pseudescherichia vulneris
Pathway
pvj03030
DNA replication
pvj03430
Mismatch repair
pvj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LMA04_08175 (dnaE)
03430 Mismatch repair
LMA04_08175 (dnaE)
03440 Homologous recombination
LMA04_08175 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvj03032
]
LMA04_08175 (dnaE)
03400 DNA repair and recombination proteins [BR:
pvj03400
]
LMA04_08175 (dnaE)
Enzymes [BR:
pvj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LMA04_08175 (dnaE)
DNA replication proteins [BR:
pvj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LMA04_08175 (dnaE)
DNA repair and recombination proteins [BR:
pvj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LMA04_08175 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
WAH53987
LinkDB
All DBs
Position
complement(1679682..1683164)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGQPALAITDFTNLCGLVKFYGTGHGA
GIKPIVGADFHVQSDIMGDEFTQITVLAANNTGYQNLTLLISRAYQRGYGALGPWIDREW
LADLNEGLILLSGGRMGDVGKSLLRGNAALVDQCVSFYETHFPDRFYLELIRTGRPDEES
YLHAAVELAQERGLPVVATNDVRFIDSGDFDAHEIRVAIHDGFTLDDPKRPRLYSPQQYM
RSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGEMTTEDFLIMKSKEGL
EERLEFLFPDPAVRAEKRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRRAKQGLEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAILEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLNDALKAADQHAKAEAIGQADMFGVLAEEPAQIEQSYANCQRWPEQVVLDGERETLGLY
LTGHPITQYLKEIERYVGGLRLKDMHPTERGKITTAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLVGPEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaccacgttttgtccacctacgggtgcacagcgactactccatgatcgatggg
ctggctaagaccgggccgctggtaaaaaaggcggccgcgttaggtcagcctgcgctggcg
atcaccgattttaccaacctctgcggtctggttaagttctacggaacgggccacggggca
gggattaagccaatcgttggggcggattttcacgtccagagcgatatcatgggcgacgag
tttacccaaattacggtgctcgccgccaataacaccggctaccagaacctgacgctgctc
atctcccgcgcctaccagcgtggctacggcgcgctggggccgtggattgaccgggagtgg
ctggcagatctgaacgagggattgatcctgctctccggcggacgcatgggcgacgtgggt
aaaagcctgctgcgcggcaacgcggcgctggtggatcagtgcgtgagcttctatgagacc
cacttcccggatcgcttctatctggagctgatccgtaccggccgtcctgacgaggagagc
tacctgcacgcggcggttgagctggctcaggagcgtggtctgccggtcgtggcgaccaac
gatgtccgctttatcgacagcggcgactttgacgcccacgaaattcgcgtggctattcac
gacggctttaccctcgacgatcccaagcgcccgcgcctctattcaccgcagcagtatatg
cgcagcgaagaggagatgtgcgagctcttctccgatatcccggaagcgctggagaacagc
gtcgagatcgccaaacgctgcaacgtcaccgtgcgtctcggcgaatacttcctgccgcag
ttcccgaccggcgagatgaccaccgaagatttcctgattatgaaatcgaaggaggggctg
gaggagcgtctggagttcctcttcccggacccggcggtgcgtgccgagaagcgccccgag
tatgacgagcgcctcgacgttgaactgaaagtgatcaaccagatgggcttcccgggctac
ttcctgatcgttatggagtttatccagtggtcaaaggataacggtgtcccggtagggccc
ggccgtggttccggcgcaggctcgctggtggcctacgcgctgaagatcaccgacctcgat
ccgctggagtttgacctgctgtttgaacgcttcctgaacccggagcgtgtatcgatgcct
gacttcgacgttgacttctgcatggagaaacgtgaccaggtgatcgaccacgtggcggag
atgtacgggcgcgaggcggtatcacagattatcaccttcggtacgatggcggcgaaagcg
gtgatccgcgacgtcggccgtgtgctgggccatccctacggctttgtggaccgcatctcc
aagctggtgccgccggatccgggcatgaccctggcgaaagcctttgaggccgagccgcag
ctgccggagatctatgaggccgatgaagaggttagggccctcatcgacatggcgcgcaag
ctggaaggggtaacccgtaacgccggtaagcacgccggtggggtagtgatcgcgccgacc
aaaattactgattttgcgccgctctactgcgacgaagccgggcagcatccggtgacccag
ttcgataagaacgacgtcgaatatgcggggctggtaaagttcgacttcctcggcctgcgt
acgctgacgatcatcgactgggcactgaagatgatcaacccgcgccgggcgaagcaggga
ctggagccgattgatatcgctgcgattcccctcgacgacaagaaaagttttgatatgctg
cagcgctcggaaaccaccgcggtcttccagcttgaatcccgcggcatgaaggatctgatt
aaacgcctgcagcctgactgcttcgaagatatgatcgcactggtggcgctgttccgtccc
ggcccgttgcagtcggggatggtggacaactttatcgaccgtaagcacggtcgggaagcg
atctcctatccggacgtgcagtggcagcacgagtgcctgaagccggtgctggagccgacc
tacggcatcatcctctatcaggagcaggtgatgcagattgcccaggagctctccggctat
acgctgggcggcgcggacatgctgcgtcgtgcaatgggtaagaagaagccagaagagatg
gccaagcagcgctcggtctttgaagatggggcgaaaaagaacggcgtcgacggcgagctg
gcgatgaaaatcttcgatctggtggagaaattcgccggctacggatttaacaaatcgcac
tccgccgcctatgctttggtgtcgtaccagacgctgtggctaaaggcccactatcccgct
gagtttatggcggcggtaatgacggcggatatggacaacaccgagaaggtggtaggcctg
gtggatgagtgctggcggatggggttaaagatcctgccgccggacattaactccgggctg
taccattttcacgttaacgacgacggcgaaatagtctacgggatcggcgctatcaagggc
gtaggtgaaggtccgattgaagccattctggaggcgcggaataaagacggctacttccgc
gagctgtttgacctctgcgcccgcaccgacaccaaaaagcttaaccgtcgggtgctggag
aagctaattatgtccggggcgtttgaccgcctcgggccgcaccgcgccgcgctgatgaac
tcgctgaacgatgcgctaaaagccgccgatcagcatgctaaggcagaggcaattggtcag
gcggatatgttcggcgtgctggcggaggagccggcgcagatcgagcagtcctacgccaac
tgccagcgctggccggagcaggtggtgctggacggggagcgtgagacgttggggctctac
ctgacgggtcacccgattacccagtatttaaaagagattgagcgctatgtcggcgggctt
cggctcaaagacatgcacccgacagagcgtggtaagatcaccactgctgcggggctcgtc
attgcggcgcgggttatggtcaccaagcgcggcaatcgtatcggtatctgtacgctggat
gaccgttccggccgtctggaggtgatgttattcaccgacgcgctggataaataccagcaa
ttgctggaaaaagaccgcatactcatcgtcagcggacaggtcagctttgatgacttcagc
ggggggcttaaaatgaccgcccgcgaagtgatggacattgacgaagcccgggaaaaatat
gctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgttcgggaactattccagtgcatctctactatcag
agagcggatgcgcgcgcccggttgcgctttggtgcaacgtggcgtgtctctccgagcgat
cgtttacttaacgatctgcgtggcctggttggcccggagcaggtggaactggagtttgac
taa
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