Pseudescherichia vulneris: LMA04_09860
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Entry
LMA04_09860 CDS
T08658
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pvj
Pseudescherichia vulneris
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvj03016
]
LMA04_09860 (truB)
Enzymes [BR:
pvj01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
LMA04_09860 (truB)
Transfer RNA biogenesis [BR:
pvj03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LMA04_09860 (truB)
Prokaryotic type
LMA04_09860 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
WAH54290
LinkDB
All DBs
Position
complement(2040224..2041171)
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AA seq
315 aa
AA seq
DB search
MSRPRRRGRDVHGVLLLDKPQGMSSNDVLQKVKRLYNANRAGHTGALDPLATGMLPICLG
EATKFSQYLLDSDKRYRVVARLGQRTDTSDADGEIVEERPVTFSAEQLADALESFRGDTM
QVPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEVHCSKGTYI
RTIIDDLGEKLGCGAHVTFLRRLAVSTYPIDRMVTLEQLHELVAQAEQQERPAAQLLDPL
LMPMDSPAADFPLVNLPLTSSVYFKNGNPVRTTGAPLNGLVRVTEGDEGKFIGMGEIDDE
GRVAPRRLVVEYPAA
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtcctcgtcgtcgcggtcgcgacgtgcacggcgtgctgctgctggataagccc
caggggatgtccagcaacgacgtgctgcaaaaagtaaagcgtctctacaatgccaaccgt
gccgggcacaccggcgcgctggatccgctggcgaccggcatgctgccgatctgcctgggc
gaggcgacaaagttttctcagtacctgctggactccgataagcgctaccgggtggttgct
cgcctcggtcagcgcaccgatacctctgatgcggatggtgagatcgtagaggagcgcccg
gtaacctttagtgcggaacagcttgctgacgcgctggaaagttttcgtggcgacacgatg
caggttccgtcgatgtattcggcgctcaagtatcagggtaaaaagctctatgagtacgcg
cgccagggcattgaggtgccgcgtgaagcccggcctattaccgtttatgagctgctgttt
attcgtcatgaaggcaacgagctggagctggaagtgcactgctcgaaaggcacctatatc
cggaccatcattgacgatctcggtgaaaagctgggctgcggcgcgcacgtgaccttcctg
cgtcgtttggccgtcagcacctatcctattgatcgcatggtaaccctggagcagctgcat
gagctggttgcgcaggcggagcagcaggagagacctgccgcccagctgctggacccgctg
ctgatgccgatggacagtccggctgcggacttcccgctagtcaacctgccgctgacctcg
tcggtctacttcaagaacggtaacccggtacgcaccacgggcgcgccgctgaacgggctg
gtgcgcgtgacggaaggtgacgaaggcaagtttatcggcatgggcgagattgacgatgag
ggccgcgtggccccgcgtcggcttgtcgtagagtacccggcggcataa
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