Pseudescherichia vulneris: LMA04_10115
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Entry
LMA04_10115 CDS
T08658
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pvj
Pseudescherichia vulneris
Pathway
pvj02020
Two-component system
pvj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LMA04_10115 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LMA04_10115 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvj03021
]
LMA04_10115 (rpoN)
Transcription machinery [BR:
pvj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LMA04_10115 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
WAH54337
LinkDB
All DBs
Position
2085729..2087162
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AA seq
477 aa
AA seq
DB search
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDAQQ
SQDTEALDSADALEQKDMPEELPLDASWDEIYTAGTPSGNGVDYQDDELPVYQGETTQSL
QDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVSLEDILDSMGDSNVGLDEVEAVLK
RVQRFDPVGVAARDLRDCLLIQLSQFASDTPWRAEAKLIISDHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWTVELNADSIPRLQIN
QHYAAMCSGTRNDADSQYIRSNLQEAKWLIKSLESRNDTLLRVSRCIVEQQQAFFDKGEE
FMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI
RALVKKLIAAENPAKPLSDSKLTTLLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaactacggctaagccaacagctcgccatgacgccccaactgcaa
caggctattcgtctgttgcagctctcgacgctggaacttcagcaagaacttcagcaggcg
ctggatagcaacccgctgctggagcaaaccgatcttcacgacgaggtagacgcccagcag
tctcaggacaccgaagcgttagactccgccgacgcccttgagcagaaagatatgcccgag
gagctgccgctggatgccagctgggatgagatctacaccgccggtacgccatctggcaac
ggcgtggactatcaggacgatgagcttcccgtctaccagggcgaaaccacccagtcgctg
caggactacctgatgtggcaggtggagctgacgcccttctccgataccgatcgcgctatt
gcgacctccattgtcgacgccgtggatgagaccggctacctgaccgtctcgctggaagat
atcctcgacagcatgggcgacagcaacgtgggtctggatgaggtcgaggcggtactgaaa
cgcgtccagcgtttcgatccggtgggcgtggcggcacgggatctgcgcgactgcctgctg
atccagctctcccagttcgccagcgataccccgtggcgggccgaagccaaactgatcatc
agcgatcacctcgatctgctggcaaaccacgatttccgcaccctaatgcgcgtgacccgc
ctgaaggaagaggtgctgaaagaggcggtgaatctgatccagtccctggatccgcgcccc
ggccagtcgatccagaccggtgagccggagtatgtgatccccgacgtgctggtacgcaag
cataatggccgctggacggtagagctgaacgctgacagcattccgcgcctgcagattaac
cagcactacgctgccatgtgcagcggcacgcgcaacgatgccgacagccagtatatccgc
agcaatcttcaggaagccaaatggctgattaagagcctggagagccgcaacgataccctg
ttgcgcgtcagccgctgcatcgtggaacagcagcaggcctttttcgacaaaggcgaagag
tttatgaaaccgatggtgctggcggatattgcccaggccgtcgagatgcatgaatccacc
atttcacgcgtgacaacccagaaatacctgcacagcccgaggggcatttttgagcttaaa
tactttttctccagccacgtgaataccgaaggcggcggcgaagcctcttctacggctatt
cgcgcgctggtgaagaagctgatagccgcagaaaaccctgcgaaaccactgagcgacagt
aaactgaccaccctgctgtccgaccagggtatcatggtggcgcgccgtaccgttgcgaag
tatcgagagtctttatccatcccgccgtctaaccagcgcaagcagctggtgtga
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