Pseudescherichia vulneris: LMA04_10325
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Entry
LMA04_10325 CDS
T08658
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
pvj
Pseudescherichia vulneris
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvj03019
]
LMA04_10325 (csrD)
Messenger RNA biogenesis [BR:
pvj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LMA04_10325 (csrD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GDPD
Motif
Other DBs
NCBI-ProteinID:
WAH54378
LinkDB
All DBs
Position
complement(2133129..2135069)
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLTGLAIFVTLLGCSFSFYRAIEQKVAERVESVAAVIDTRLVSQPPSA
LAIQLDELMVPIDIVRVVVKQEKHILLDHTRSGSYRPAGSSELYRERLIPSVKNPGASIL
LVYQDPMANYFHSVITTAPLTLAVGFMVIIIFLAVRWQRRQLAGQELLESRATRILNGER
GQRVRGSIYEWPARASSALDLLLTEIQFAGEQRSRMDTLIRSYAAQDTKTGLNNRLFFDN
QLATLLEDQEKVGSHGVVMMIRLPDFDLLRDSWGAAATEEHFFILINLLSTFIMRYPGAL
LARYHRSDFAVLLSHRTLKESESIAAQLLKSVDVLPPSKMLDREDMMHIGICAWRSGQTT
TQVMEHAEAATRTAVLQGANSWAVYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYHKPAI
NRDGSVHHRELMCRLFDGEQEVISAEYMPMVLQFGLSEEYDRQLITRLVAFLGFWPEETL
ALQITVESLIRPRFQRWLRDTLMQCEKSKRKRIIFELAEADVCQHISRLQPVVRLINALG
ARVAVTQAGLTLVSTGWIKALDAELLKLHPSLVRNIEKRTENQLLVQSLVETCKGTQTRV
FATGLRSRGEWQTLIARGVAGGQGDFFAASEPLDASVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttaacgacgaaattctcggcttttgtcaccctgctaaccgggctagcgatcttt
gtcacgctgctggggtgctcgttcagcttctatcgcgcgattgagcagaaagttgccgag
cgcgtggagtcggtcgcggcggtgattgacacgcggctggtttcgcagccgccttcggcg
ctcgctatccagctggatgagctgatggtgcccattgatatcgtgcgcgtggtggttaag
caggaaaagcatatcctgctcgatcatacgcgcagcggcagctatcgccccgcaggcagc
agcgagctgtatcgtgagcgacttatcccgtcggttaaaaatccaggggcgagcatcctg
ctggtctatcaggatccaatggccaactactttcactccgtcattaccactgcgccgctg
accctcgccgttggctttatggtcatcattatctttctggcggtacgctggcagcgccgt
cagctggcggggcaggagctgctggagagccgggctacccgcatcctcaacggcgagcgc
ggccagcgagtgcggggcagcatctacgagtggcccgcccgggccagcagcgcgctcgat
ctgctgctgaccgagatccagtttgccggcgagcagcgcagccgtatggatacgctgatc
cgctcctatgctgctcaggacaccaaaaccgggctcaacaaccgactctttttcgataac
cagctggcgacgctgctggaggatcaggagaaggtcggatcgcacggggtggtgatgatg
atccgcctgccggactttgacctgctgcgcgacagctggggagcggccgccacggaagag
cacttctttattctgatcaacctgctctcgaccttcattatgcgctaccctggcgcattg
ctggcccgctaccatcgcagcgactttgcggtgctgctctcccaccgcacgcttaaagag
tcagagagtatcgccgcccagctgctgaagtccgtggacgttctgccgccgtcaaagatg
ctcgaccgggaagatatgatgcacatcggcatctgcgcctggcgcagcgggcagaccact
acccaggtgatggagcatgccgaggcggcgacgcgtaccgctgtgttgcagggagcgaac
agctgggcggtctacgatgacagcctgccggaaaaggggcgcggcaacgtgcgctggcga
accttgatcgagcagatgctgagccggggcgggccacgcctgtaccataagcctgccatc
aaccgcgacggcagcgttcatcatcgtgagctgatgtgccgcctgtttgacggcgagcag
gaggtgatctccgccgagtatatgccgatggtgctgcagtttggcctctcggaagagtat
gaccggcagcttatcacccggctggtggcatttttaggcttctggccagaggagacgctg
gctctgcagatcaccgtggagtcgctgattcgcccgcggtttcagcgctggctgcgggat
acgctaatgcagtgcgaaaaatcgaagcgaaaacgcattatttttgaacttgcagaggca
gatgtttgtcaacacatcagtcggttacaaccggtggtgcgtttgatcaacgcgttaggt
gcccgggtggcggtcacccaggcaggcctgacgctggtcagcaccggctggatcaaggcg
ctggatgccgaactcttaaagctgcatccaagcctggtacgcaatattgagaagcgcact
gagaaccagctgctggtgcagagcctggtcgagacctgcaaaggcacgcagacccgcgtc
ttcgccaccggtcttcgctcccgaggcgaatggcagacgctgattgcgcgtggcgtagcg
ggtgggcagggggatttctttgccgcgtcggaaccgcttgatgcaagcgtgaaaaaatat
tcacaaagatactcggtttga
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