Pseudescherichia vulneris: LMA04_12640
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Entry
LMA04_12640 CDS
T08658
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pvj
Pseudescherichia vulneris
Pathway
pvj03030
DNA replication
pvj03410
Base excision repair
pvj03420
Nucleotide excision repair
pvj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LMA04_12640 (polA)
03410 Base excision repair
LMA04_12640 (polA)
03420 Nucleotide excision repair
LMA04_12640 (polA)
03440 Homologous recombination
LMA04_12640 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvj03032
]
LMA04_12640 (polA)
03400 DNA repair and recombination proteins [BR:
pvj03400
]
LMA04_12640 (polA)
Enzymes [BR:
pvj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LMA04_12640 (polA)
DNA replication proteins [BR:
pvj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LMA04_12640 (polA)
DNA repair and recombination proteins [BR:
pvj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LMA04_12640 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LMA04_12640 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
WAH50990
LinkDB
All DBs
Position
2617408..2620194
Genome browser
AA seq
928 aa
AA seq
DB search
MVQIPENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAV
VFDAKGKTFRDELFEHYKSHRPPMPDDLRSQIEPLHAMVKAMGLPLMAISGVEADDVIGT
LALEAEKMGRPVLISTGDKDMAQLVTPNVTLINTMTNTILGPEEVIAKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLETLFNESDKIASLSFRGAKTMAAKLEQNK
EVARLSYQLATIKTDVELDLSCEQLTVQQPAADELLSLFKRYEFKRWTADVEAGTWLQGK
GAKPAAKPQAAPVVEVEDDEPATPLSAEHYVTVLDEPTLNEWIARLKKAPVFAFDTETDS
LDNVSAQLVGLSFATEPGLAAYVPVAHDYLDAPEQLSRERVLALLKPILEDEKALKVGQN
LKFDRGILQNYGIELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHQTVTFEQIAGKG
KNQLTFNQIALEEAGHYAAEDADVTLQLHLKMWPKLEKHAGPLNIFQNIEMPLVPVLSRI
ERNGVKIDPAVLHKHSGEITLRLAELEKKAHEIAGEAFNLSSTKQLQVILFEKQGIKPLK
KTPGGAPSTSEEVLEELALDYPLPKVILEHRGLSKLKSTYTDKLPLMINPKTGRVHTSYH
QAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRD
KGLLSAFAEGQDIHRATAAEVFGMPLESVSNDQRRSAKAINFGLIYGMSAFGLSRQLNIP
RKESQRYMDLYFERYPGVREYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAE
RAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVEQVSQKI
HELMENSTQLDVPLLVEVGSGENWDLAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggttcagatcccagaaaacccactaatcctcgttgatggctcgtcatacctctatcgc
gcttatcacgcgttcccaccgctgaccaatagcgcgggagagccaaccggcgcaatgtac
ggggtgctgaacatgctcagaagcttgatcctgcagtatcagcctacgcatgccgcggtg
gtgtttgatgcgaaagggaagaccttccgtgacgaactgtttgagcactataaatcccac
cgtccgccaatgcctgatgacctgcgctcgcagatagagccgctgcatgcgatggtcaaa
gcgatgggcctgccgctgatggccatttccggcgttgaggcggatgatgttatcggtacg
ctcgccctcgaggccgaaaaaatgggtcgcccggtactcatcagcaccggtgataaagat
atggctcagctggtcacgccgaacgtgacgctgattaacaccatgaccaacaccattctc
ggcccggaggaggtgatcgctaaatatggtgtgccgcctgagctgatcatcgattttctt
gccctgatgggcgactcctccgataacatccccggcgtgcccggcgtgggtgaaaaaacg
gcgcaggcgctgctgcaggggctgggcggtctggaaacactgttcaatgagtccgataaa
attgccagcctcagcttccgcggcgcaaaaacaatggcggcaaagctggagcagaataaa
gaggtcgcccgtctctcctaccagctggcgaccatcaagaccgacgttgagctggatctc
tcctgtgaacagctgacggtacagcagcctgccgcagatgagctgctgagcctgtttaaa
cgatatgaatttaaacgctggacggcagatgtcgaagcggggacatggctgcagggtaaa
ggggcaaaaccggccgcgaagccacaggctgcccctgtcgttgaagttgaagatgatgag
ccagccacgccgctctccgcagagcactacgtcaccgtccttgatgagccgacgctgaac
gagtggattgcacggctgaaaaaggcgccggtgtttgccttcgataccgaaacggatagc
ctggacaacgtcagcgctcagctggtgggcctgtcgtttgccaccgagccgggtctggcg
gcctacgtgccggttgcccatgactaccttgatgcgccagagcagctctcccgcgagcgg
gttctggcgctgttaaagccgattctggaagatgaaaaagcgttaaaggtggggcagaac
ctcaagttcgatcgcggcattctacagaactacggcattgagctgcgcggcatcgctttt
gacaccatgctcgagtcttatattctcgacagcgttgccggacgccatgatatggacagc
ctctccgatcgctggctgaagcaccagaccgtgacctttgagcagatcgctggcaagggt
aaaaaccagctgacctttaaccagattgcactggaagaggccgggcactatgcggcggaa
gacgctgacgtcaccctacagctgcatcttaagatgtggccaaagctggagaaacatgcg
ggcccgctgaatattttccagaacattgagatgccgctggtgccggtgctctcccgcatc
gagcgtaacggcgtgaagatcgatccggcggtactgcacaagcactccggtgagatcacc
ctgcggctggccgagctggagaaaaaggcccatgagattgcgggtgaagcgtttaacctc
tcctcaaccaaacagctgcaggttatcctgtttgaaaagcagggcattaagccgctgaag
aagacgccgggtggcgcaccctcaacctcagaagaggtgctggaggagctagcgctggac
tatccgctgccgaaagtcattctggagcatcgcgggctgtcaaagctgaaatcgacctat
accgataagctgccgctgatgatcaaccctaaaaccgggcgcgtgcacacctcctatcac
caggcggtcaccgcaacaggacggctctcatctaccgatccaaacctgcagaatatcccc
gtgcgtaacgaggagggacgacgcatccgtcaggcgtttatcgccccggaggattacgtc
atcgtctctgcggactactcgcagatcgagctacgcattatggcgcacctgtcgcgcgat
aagggcctgctctccgcctttgccgagggccaggatatccaccgcgccacggcggcagag
gtatttggcatgccgctagagagcgtatcgaacgatcagcgccgcagcgcgaaggcgatc
aactttggtctgatctacggcatgagcgcatttggtctgtcgcgccagctgaacatcccg
cgcaaagagtcgcagcgttacatggatctctactttgagcgctatccaggcgtgcgtgag
tatatggagcgcacccgggcccaagcgaaagagcagggctacgttgaaacgctggagggg
cgtcgcctctatctgccggacatcaaatccagcaatgcggcgcgccgggctggcgctgag
cgtgcagcgattaatgctccgatgcagggtacggcggcagatattatcaagcgggcaatg
atcgccgtggatgcctggctacaggcggagcagccgcgcgtgcggatgattatgcaggtt
cacgatgaactggtgtttgaagtgcataaagacgatgtggagcaggtttcccagaagatc
catgagctaatggagaacagcacccagctggatgttccgttgctggtggaggtgggcagt
ggtgaaaactgggatctggcgcactaa
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