Pseudescherichia vulneris: LMA04_13260
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Entry
LMA04_13260 CDS
T08658
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pvj
Pseudescherichia vulneris
Pathway
pvj00300
Lysine biosynthesis
pvj00470
D-Amino acid metabolism
pvj01100
Metabolic pathways
pvj01110
Biosynthesis of secondary metabolites
pvj01120
Microbial metabolism in diverse environments
pvj01230
Biosynthesis of amino acids
Module
pvj_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
LMA04_13260 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
LMA04_13260 (dapF)
Enzymes [BR:
pvj01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
LMA04_13260 (dapF)
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Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
CntK_N
Motif
Other DBs
NCBI-ProteinID:
WAH51099
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Position
2756876..2757700
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AA seq
274 aa
AA seq
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MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLIVEPPYDPDLDFHY
RIYNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE
PNFDPAAVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVESVDTAPVETLGPVLE
SHERFPERANIGFMQVVKREHIRLRVFERGAGETQACGSGACAAVAVGIQQGLLAEEVRV
ELPGGRLDIAWKGPGQPLFMTGPATHVYDGFIHL
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctctaaaatgcatggccttggcaacgactttatggtcgtcgacgcggtaacg
cagaatgtctttttttcacccgagctgatccgccgcctggcggatcgccatctgggcgtt
ggcttcgatcagctgctgatcgtcgagccgccttacgatccggatctcgactttcactac
cggatctacaacgccgacggcagtgaggtgtcccagtgcggcaacggtgcgcgttgcttc
gcccgctttgtacggctaaaggggctgactaacaagcgcgatattcgcgtcagcaccgcc
aacgggcggatggtgctgagcgtcacggaagatgagctggtacgggttaatatgggcgag
ccgaactttgatcccgctgccgttccgtttcgcgcgaacaaagcggaaaaaacctatatt
atgcgcgctgccgaacagaccattctgtgcggcgtcgtttcgatggggaatccgcactgc
gtgatccaggtggagagtgtcgacaccgccccggtcgaaacgctgggcccggtgctggag
agccacgagcgcttcccggagcgcgccaatatcggctttatgcaggtcgttaagcgcgaa
catattcgcctgcgcgtctttgaacgcggggcgggcgagacccaggcctgcggcagcggc
gcatgtgcggcggtggccgtagggatccagcaaggtttactggcagaagaggtacgcgtg
gagcttccaggcggccgtcttgatattgcctggaagggtccgggccagccgctgtttatg
accggcccggcaacacacgtctacgacggatttattcatctatga
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