Pseudescherichia vulneris: LMA04_15040
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Entry
LMA04_15040 CDS
T08658
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pvj
Pseudescherichia vulneris
Pathway
pvj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMA04_15040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvj03019
]
LMA04_15040
03400 DNA repair and recombination proteins [BR:
pvj03400
]
LMA04_15040
Enzymes [BR:
pvj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMA04_15040
Messenger RNA biogenesis [BR:
pvj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LMA04_15040
DNA repair and recombination proteins [BR:
pvj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LMA04_15040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WAH51421
LinkDB
All DBs
Position
3138338..3140905
Genome browser
AA seq
855 aa
AA seq
DB search
MNLSQLIDNKDIPSKLRECLLPEATAGRLDRRALIRDWLYREKYAHHNDNELTVPDDSHP
GWPRQEEWEASGIDCQRLGQTFLLSAGPAWCPQWLEKGNSIPFLASDQHQSCRKDTRVLM
DYVLRRYFKKDSYISYQAPGQRDAVRRALFAPPGSTLLVNLPTGTGKTLVPQALALTASA
PGALCVLIAPTTALVLELARRFRELLIEAGNKAEAVTGWYSGLPAQDKYDTYMRIRAGEQ
RLIVTSPEATCSSLQFALFEAAKQGGLRHVIVDEAHIVASWGNDFRPHFQQLGGLIRGLK
RISREANLTPCSTLLMSATITEASRKILRDTFDQEMSEVHACHLRPEPAYWCYRAKDHRD
KRDKVLQSLAHAPRPLIFYVTRPKEAEEWAQQLRLQGYQRLATFTGDTPNDVRRGLLEKW
DKNQLDIMIATSAFGVGMDKNDVRTVIHATVPENMDRFYQEVGRGGRDGFACTSLLIYNH
QDVKQAEHLSSQKLIGLELGLERWKKLWGSAESVGENLYRIDIERIHSGLNFRSKQNKLW
NLRTVLMMVRAGVLELDTDLQNPPDKKGFADINRYEAAKEQIIRQNGNSLVVRILSSHHT
GEELWKTRIIPSREETLQAARANHNALINWLHTPLSRPLCEALVDLYSMAEFIPGHACGG
CPGCRDNQALTSNYLSPPTLLLNPPASVTQQSLSRWQALSGLSSSSCFITYPPVNDDEWE
RENWYHCVATLLVQLHHRGIVQRVWADPTLLNSVFNAIPRGERLTLLSDELPARDEPALD
NDVMAELAELVLPTQESCANGYLPPFNPAPLQLTLIPHDMPDPHHPGGAHYVLLDNHNWI
TIEQLQRKLDSVDYQ
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttcacaactgattgataataaagatattccatcaaaattgagagagtgcctg
ctgccggaggcgaccgccgggcgcctcgaccgccgggcgttgatacgtgactggctgtac
cgggaaaaatatgcccaccacaacgataacgaactgaccgtccctgatgacagccaccct
ggttggccaagacaggaggagtgggaagccagcggtattgactgtcaacgactgggtcag
acctttctgctcagcgctggtcctgcttggtgcccacagtggctggagaagggaaacagc
atcccttttctcgccagcgatcagcaccaatcctgccgcaaggacactcgagtactgatg
gactatgtcttgcgccgttacttcaagaaggacagctatatcagctatcaggcaccgggc
cagcgcgatgcggtacgccgggctctgttcgccccaccgggcagtacgctgttggtcaat
ttgcccactggcactgggaaaacactggtaccgcaagcattagctctgacagcctccgct
cccggggctctttgtgtactgatcgccccgaccacagcgctggtgttggaactggctcgc
cgtttccgggagttgctgatcgaagcagggaacaaagcagaagcggtcaccggctggtat
agcggcttaccggcgcaggataaatatgatacgtacatgcgtatccgtgcgggtgagcag
cgactgatcgtcacctctcctgaagcgacttgtagttctctgcagttcgccttatttgaa
gcagcaaaacagggaggactgcgccatgttattgttgatgaagcgcatattgtcgccagc
tggggcaacgactttcgcccgcatttccagcaacttggtggcttaatccgcggactgaag
cgcatcagtcgtgaagcgaatcttacgccgtgctctacattgctgatgagtgccactatc
actgaagccagccgtaaaatcctgcgcgataccttcgatcaggagatgagcgaagtccac
gcctgccatctgcgcccggaaccagcttactggtgttatcgggcaaaagatcacagagac
aaaagggataaggtgctgcaatcgctggctcatgcgccacgcccattgatcttctacgtg
acgcgaccgaaagaagctgaagagtgggcgcaacaactgcgtttgcagggatatcagcgt
ttggcaacatttaccggtgatacaccgaatgatgtacgccgaggcctgctagaaaaatgg
gataaaaaccagctggatatcatgattgcgacctcggcatttggcgttggtatggataaa
aacgacgtgcgcacagtgatccatgccaccgtgccggaaaacatggaccgcttctaccag
gaagtgggacgtggtggacgcgatggctttgcctgcacctcactgctaatttacaatcat
caggatgtcaaacaggcagaacatctgtcctcacaaaagttgattggtcttgagttgggc
ctggaacgctggaaaaagctatggggcagtgccgaatcggtgggcgaaaacctgtatcgt
attgatatagagaggatccatagcggccttaatttccgcagcaaacaaaataaattatgg
aacctgcgtaccgtattgatgatggtgcgtgcaggagtgctggaactggataccgaccta
caaaacccgcctgacaaaaaaggctttgccgatattaatcgctacgaagcggcaaaagag
caaatcatccgacagaacggaaactcactggtagtacgcatcttgagcagtcaccacacc
ggagaagaattgtggaaaacacgtattatcccctcccgtgaagagacgctacaagctgca
agggctaaccataatgcattaatcaactggctgcatacgcctctgagcagaccgctgtgc
gaggcacttgtggatctctactccatggcagaatttattccgggtcacgcctgtggtggt
tgccctggctgtcgcgataatcaggcgcttactagtaattatctgagcccaccgacgctg
ttgcttaacccgccagcgtcggtgacacagcagtcgttaagccgctggcaggcgctcagc
ggcctatcttcctccagttgctttatcacctatccgcccgttaacgacgatgagtgggaa
cgtgagaactggtatcactgcgtcgcgacgctactggtgcaactgcatcatagaggtatc
gtccagcgcgtctgggcagatcctaccttattgaatagcgtatttaacgctattccgcgc
ggcgagcgcctgaccttattgagtgacgaattgcctgcacgtgatgaacctgcgctggat
aacgatgtaatggccgagttggcagagttggtacttcccacacaagagtcctgcgctaac
ggctacctgccgccgttcaacccagccccattacaactgaccctgatcccgcatgatatg
cccgatcctcaccatcccggcggggcgcattacgttcttctcgataatcacaattggatc
accatcgaacaacttcaaaggaaactagacagtgtcgattatcaataa
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