Pseudescherichia vulneris: LMA04_16315
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Entry
LMA04_16315 CDS
T08658
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pvj
Pseudescherichia vulneris
Pathway
pvj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LMA04_16315 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvj03400
]
LMA04_16315 (recD)
Enzymes [BR:
pvj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LMA04_16315 (recD)
DNA repair and recombination proteins [BR:
pvj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LMA04_16315 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
Helicase_RecD
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
AAA_28
MukB
NPHP3_N
CbiA
PhoH
SRP54
UvrD_C
DEAD
NTPase_1
TrwB_AAD_bind
T2SSE
FtsK_SpoIIIE
AAA
DO-GTPase1
Motif
Other DBs
NCBI-ProteinID:
WAH51657
LinkDB
All DBs
Position
3417392..3419224
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AA seq
610 aa
AA seq
DB search
MTMQTLLIEALAQKLFRPLDVQFALTVAGRDEPAVTLAAAILSRDAGEGHVCLPLSRLAA
EAEDKSHSLLMALFAEAGAPCDWAGILQRSAAVSDGHTPAPMVLAGDRLYLNRMWCNELT
VASFFSEVNQPLSVDETQLRQILDGLFPPTEGINWQKVAAAVALTRRISVISGGPGTGKT
TTVAKLLAALVQMANGGRCRIHLAAPTGKAAARLTESLGAALRQLALTDDQKKRLPVEAS
TLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPAHGRVIFLGDR
DQLASVEAGAVLGDICAWVNAGFTPARAEQLSRLTGMAVPGGEPGGAGALRDSLCLLQTS
YRFGSDSGIGQLAAAVNRGDKKSTRSVFSQGFSDIEHKPLQARDDYQALLDDALAGYARY
LQLVRDEAEPKAILAAFSEYQLLCALREGPFGVAGLNERLEQTLANQRRISRTPHSRWFD
GRPVMISRNDSALGLFNGDIGVALNRGQGTRVWFPLPDGSIKSVQPSRLPEHETAWAMTV
HKSQGSEFDHAALILPGQMVPVVTRELVYTAITRARRRLSLYADERILVQAIATRTERRS
GLGEIFAQVK
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgacgatgcaaactctgcttatagaggcgctggcgcagaagctgtttcgcccgttggat
gtccagtttgccctgaccgtggccggacgcgacgagccagcggtaaccctggcggcggcg
atccttagccgcgacgcaggggagggccacgtctgtctgcccctctcccgactggcagcc
gaggccgaagataagagccattcgctgctgatggcgctgtttgccgaggccggtgcgccc
tgcgattgggctgggatcctacagcgctctgctgccgtcagcgacggtcatacccctgcg
ccgatggtgctggctggggatcgcctctaccttaaccgtatgtggtgcaacgagctgacc
gtagcgagtttcttcagcgaggttaaccagccgctgagcgtggatgaaacccagctgcgc
cagatcctggacgggcttttcccgccaacggaggggatcaactggcagaaggtggcggcg
gcggtggcgttgacccggcggatctcggtgatctccggcgggcccggcaccggaaaaacc
accacggtagcgaagctgctggcggcgctggtacagatggcaaacggtggacgctgccgc
atccatctggccgccccgaccgggaaagcggcggcacgcctgacggagtcgctgggcgca
gcgctgcgccagctggccttaaccgacgatcagaaaaagcgcctgccggtggaagccagt
acgctgcaccgcctgcttggcgcccagcccggcagccagcgcctgcgctatcacgccggt
aacccgctgcacctcgacgtgctggtggtggatgaagcatcaatgattgacctgccgatg
atgtcacggctgatcgatgcgctgcctgcgcatggtcgggtgattttcttaggcgatcgc
gatcagctggcctcggtagaggcaggggcggtgctgggcgatatctgcgcgtgggttaac
gcgggctttaccccggcgcgggcggagcagctctcccgcctgacggggatggccgttccc
ggcggcgagccgggtggggcaggcgcattgcgcgacagcctctgtctgctgcaaaccagc
taccgcttcggcagcgactccggcattggacagctggcggcggcggtaaaccggggcgat
aagaaaagtacccgctcggtgtttagccagggctttagcgacattgagcacaaaccgctt
caggcgcgtgacgattaccaggccctgcttgacgatgcgctagcgggctacgctcgctat
ctgcaactggtgcgcgatgaggcggagccaaaggcgatcctcgcggcgttcagtgaatat
cagctgctctgcgccctgcgtgaagggccgtttggcgtagcaggactcaacgagcggctg
gagcagaccctggcgaaccagcggcggattagccgcacgccccactcgcgctggtttgat
ggacggccggtgatgatctcccgcaacgacagcgcgctggggctgtttaacggcgatatc
ggcgtggcgctgaaccgggggcaggggacgcgcgtctggttcccgctgccggacggcagc
atcaaatcggtgcagcccagccgcctgccggagcacgaaacggcctgggcgatgacggtg
cacaaatcgcagggctcagagttcgaccacgccgcgctgatcctgccggggcagatggtg
ccggtggtgacccgggagctggtctataccgccatcacccgcgcccgccgtcggctctcg
ctctacgccgacgagcgtattctggtgcaggctattgccacccgtaccgagcggcgcagc
ggcctcggcgagatttttgcccaggtcaaatag
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