Pseudescherichia vulneris: LMA04_16455
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Entry
LMA04_16455 CDS
T08658
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pvj
Pseudescherichia vulneris
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvj03009
]
LMA04_16455 (rlmD)
Enzymes [BR:
pvj01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LMA04_16455 (rlmD)
Ribosome biogenesis [BR:
pvj03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LMA04_16455 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
RrnaAD
PCMT
MTS
TRM5-TYW2_MTfase
Methyltransf_4
Methyltransf_11
Cons_hypoth95
Methyltransf_23
Methyltransf_15
Methyltransf_12
Methyltr_RsmB-F
Ribosomal_L22
FtsJ
Ubie_methyltran
UPF0020
Methyltransf_32
CMAS
PrmA
TPMT
Motif
Other DBs
NCBI-ProteinID:
WAH51681
LinkDB
All DBs
Position
3447509..3448807
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AA seq
432 aa
AA seq
DB search
MAQFYSAKRRVTTREIITVTVNDLDPFGQGVARHNGKALFVTGLLPDERGEVTLTEDKRQ
FARGVVKRRLSDSPDRETPPCPHFGVCGGCQQQHASVALQQRSKSNALARLMKRDVDDII
DAEPWGYRRRARLSLNYQPKTQKLEMGFRKASANDIVNVVRCPVLTPRLEALIPSLRECL
QSLAAVRHLGHVELVLADNGPLMVLRHTAPLPAADREKLERFSHSQGVALFLAPESAILE
QVSGALPWYTSDGLRLTFSPRDFIQVNDKVNQQMVERALAWLDVQPDDRVLDLFCGMGNF
TLPLAKRAASVVGVEGVAALVEKAQENARQNGLQNVTFFHENLEDDVTKQPWAQHGFNKV
LLDPARAGAAGVMQHVLKLSPKKVVYVSCNPATLARDSEALLNAGYTMSHLAMLDMFPHT
GHLESMVLFEHE
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctgcaaaacggcgcgtgacgacgcgtgagatcataaccgtaaca
gtaaatgacctggatccctttggccagggcgttgcacgccacaacggcaaagcgctattc
gtgacaggactgctgcccgatgaacgtggcgaagtgacgctcactgaagataaacgccag
ttcgcccgtggcgtggtgaagcgtcggttgagcgacagcccggatcgcgaaacgccgccg
tgcccgcactttggcgtctgcggcggctgccagcagcagcatgccagcgtggcgctgcag
cagcgcagcaaaagcaatgcgctggctcgtctgatgaagcgcgacgtggacgacatcatt
gatgccgagccgtggggctaccggcgacgggcgcggctgagcctgaactaccagccgaag
acgcaaaagctggagatgggctttcgtaaagccagcgccaacgacattgtgaacgtggtg
cgttgcccggtgctgacgccccgtctagaggcattaatcccttcactgcgtgaatgctta
cagagcctggcggcggtacgtcacctcggccacgttgagctggtgctggcggataacggc
ccgctgatggtgctgcgccatacggcgcctctacccgctgccgatcgcgaaaaactggaa
cgcttttcgcattctcagggcgttgcgctgtttcttgccccggaaagcgccatactggag
caggtatccggcgcgttgccctggtatacctctgacgggctacgcctgacctttagcccg
cgtgatttcattcaggttaatgataaagtgaaccagcagatggtagagcgggcgctggca
tggctggacgttcagccggatgaccgagtgctggatctcttctgcggcatgggcaacttt
accctgccgctggcaaaacgcgccgccagcgtggtcggcgtagagggggtcgccgcgctt
gtcgagaaggcgcaggagaacgcgcggcagaacggcttgcagaacgtgacattctttcat
gaaaacctggaagatgatgtcactaagcaaccctgggcgcagcacggttttaacaaggtg
ctgctcgatccggcccgcgccggagcggcaggcgtcatgcagcatgtgctaaaactatcc
ccaaaaaaggtggtctacgtgtcatgcaaccctgcgacgcttgcccgtgacagcgaagca
ttattaaatgcgggctacactatgtcgcaccttgcgatgctggatatgttcccacacacc
gggcatctggagtcgatggtgctgtttgagcacgagtga
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