Pseudescherichia vulneris: LMA04_17345
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Entry
LMA04_17345 CDS
T08658
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pvj
Pseudescherichia vulneris
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvj03009
]
LMA04_17345 (srmB)
Enzymes [BR:
pvj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMA04_17345 (srmB)
Ribosome biogenesis [BR:
pvj03009
]
Prokaryotic type
rRNA helicases
LMA04_17345 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
UvrD-helicase
AAA_22
CMS1
DUF561
Motif
Other DBs
NCBI-ProteinID:
WAH51840
LinkDB
All DBs
Position
complement(3644043..3645365)
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AA seq
440 aa
AA seq
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MTVTTFSELELDESLLDALQEKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLL
PALQHLIDFPRKKSGPPRILILTPTRELAMQVAEHARELSANTHLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLMQYIKEENFDCRAVETLILDEADRMLELGFAQDIEHIAGETRW
RKQTMLFSATLEGNAVKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNFEHKTALLQ
HLLKQDDATRTIVFVRKRERVHELAELLRNAGINNCYLEGEMAQVKRTEGIKRLTEGRVN
VLIATDVAARGIDIPDVSHVINFDMPRSGDIYLHRIGRTGRAGRKGTAISLVEAHDHLLL
QKIGRYVDEPLKARVIDELRPTTRAPSEKMTGKPSKKALAKRAERKEKEKEKPRVKQRHR
DTKNIGKRRKPSGSPESSNE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaacgactttttccgaactcgaacttgatgaaagcctgctggacgcgctccag
gagaaaggcttcacacgcccaactgccattcaggcggctgctattccgcctgcgctggag
ggccgcgatgtactcggttccgcgcctaccggcacgggtaaaacggcggcgtacctgctg
cctgcgttgcagcacctgatcgattttccgcgtaagaaatccggcccgccgcgtattctg
attctgacgccgacccgtgaactggcgatgcaggtcgccgagcacgcgcgtgaactgtcg
gcaaatacccatctggatatcgctaccattaccggcggcgtcgcctatatgaaccacgcc
gaagtgttcagcgaaaaccaggatatcgtggtcgcgacgacgggccgcctgatgcagtac
atcaaagaagagaactttgactgccgcgccgtagagacgctgatcctcgatgaagcggac
cgcatgctggagctgggttttgcccaggatatcgagcacattgccggagagacgcgctgg
cgtaagcagaccatgctcttctccgccaccctggaaggcaacgccgttaaggactttgcc
gagcgcctgctggaagatccggtcgaggtctctgcaacgccgtcgacccgcgagcgtaaa
aagatccaccagtggtactaccgcgcggataacttcgagcataaaaccgccctgctgcag
cacctgctcaagcaggacgacgcgacccgtaccatcgtgtttgtccgcaagcgcgagcgc
gtgcatgagctggcagagctgctgcgtaacgccggtattaacaactgctatcttgaaggc
gagatggctcaggtgaagcgtaccgaaggtatcaaacgcctgaccgaaggccgggtgaat
gtgctgatcgccaccgacgttgccgcgcgcgggatcgatattccggacgtgagccacgtc
attaacttcgatatgccgcgcagcggtgatatctacctgcaccgtattggccgtaccggc
cgcgccgggcgcaagggcactgccatttcgctggtcgaagcccatgatcatctgctgctg
cagaaaattggccgctacgttgacgagccgttgaaggcacgcgtcattgacgagctgcgc
cccactacccgtgcgccgagcgagaagatgacggggaaaccgtccaagaaggcgctggcc
aagcgcgccgagaggaaagagaaagagaaagagaagccgcgcgtgaagcagcgccatcgc
gataccaaaaacattggtaagcgtcgtaagccaagcggctctccggagtcttcaaacgag
taa
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