Pseudomonas viciae: EPZ47_01335
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Entry
EPZ47_01335 CDS
T07167
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pvk
Pseudomonas viciae
Pathway
pvk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EPZ47_01335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvk03019
]
EPZ47_01335
03400 DNA repair and recombination proteins [BR:
pvk03400
]
EPZ47_01335
Enzymes [BR:
pvk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EPZ47_01335
Messenger RNA biogenesis [BR:
pvk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EPZ47_01335
DNA repair and recombination proteins [BR:
pvk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EPZ47_01335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QBZ87405
UniProt:
A0A4P7PAX2
LinkDB
All DBs
Position
303306..305234
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AA seq
642 aa
AA seq
DB search
MHSTLEQVFGYPQFRPGQEVAISAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLAFLQRHGIASASIDSAQSRDEASDAMARARSGELKILMISVERLKNERFR
NFLQQVQISLLVVDEAHCISEWGHNFRPDYLKLPDYQHQFNIPQVLLLTATATPKVIADM
QAKFAIAAEDVVTTGFYRPNLNLLVEPVRGADKRGRLVQWLGERAGQPSIVYVTLQKTAE
QIAEHLNQHGIGAEAYHAGLPHEQREAIQRRFMGGESNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELEGIRCVLDELK
AAASDGQWEFLLGPLADQSNIRQLPLKTLLVQLELRRLIAPRYAYFAEYRFKFLTEPQAL
LERFEGERRDFVSAIIQTSSRARAWATVNFDGMYQQYHAERNRVVKALDYFQEKGWIELE
SKQMTEVYNVLETDLDPQVLGAELYAYFSRHEHGEIARIHAMLELFASDRCLGYRLAQYF
GDENAPRQCGHCSVCHGHVTRLPEPPSLPALVDKGFEALCGDFIHRHEQHTGSVPSAERL
TRFLCGISVPLFTKLKARTIRGYAALEEYPYAEVRQWTQAHL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcacagcaccctggaacaggttttcggttatccacagtttcgccccggtcaggaagtg
gccatcagcgccgtactggccggtcggtcggcggcggccattttccccaccgggtccggc
aagtccctgtgctatcaattgccggccctgctgttaccgcacctgaccctggtggtctcg
ccactgctggcgctgatgcaggatcagttggcgttcttgcaacgccacggcatcgcatcg
gccagcatcgattcggcccagagccgtgacgaagccagcgatgccatggcccgggcacgt
tcgggcgaattgaagattctgatgatttcggtggagcggctgaagaacgagcgcttccgc
aatttcctgcagcaggtgcagatctcgctgctggtggtggacgaggctcactgcatctcc
gaatgggggcataacttccgacctgactacctcaagcttcccgattatcagcatcagttc
aacatcccccaggtgttgctgctgacggccaccgccacacccaaggtcatcgccgacatg
caggcgaagttcgccatcgccgccgaggacgtggtgacgacgggtttctaccggcccaac
ctcaatttgctggtcgagccggtgcgcggtgcagacaagcgcgggcgattggtgcaatgg
ctgggcgagcgcgccgggcaaccgagcatcgtctacgtcaccctgcagaaaaccgccgag
cagattgccgaacacctgaaccagcatggtataggggccgaggcctatcacgccggtttg
ccccatgagcaacgtgaagcgatccagcggcggttcatgggcggggagtccaattgcatc
gtcgcgaccatcgcttttggcatgggcatcgacaagagcgatatccgcaacgtcgtgcat
ttcgacctgcccaaatccatcgaaaactacagtcaggaaatcggccgggccgggcgggat
gggcagccgtccgactgcctggtactggccaaccgcgacagccttaatgtgctggaaaac
tttgtgtatggcgacacccccgaactggaaggcatccggtgtgtgctcgatgagctgaag
gccgccgcctccgatgggcaatgggagtttttgctggggccgctggcggatcagagcaac
atccggcaactgccgctcaagacgctgctggttcagctggaactgcgccggctgatcgcg
ccgcgttatgcctatttcgccgagtaccgtttcaagttcctgaccgagccgcaagcgctg
ttggaacgcttcgaaggtgagcgccgggatttcgtctcggccatcatccagacctccagt
cgcgcccgggcctgggccacggtgaatttcgacgggatgtaccagcagtatcatgccgag
cgaaatcgggtggtcaaggcgctggattatttccaggaaaagggctggatcgagctggaa
agcaaacagatgaccgaggtgtacaacgtgctggagacggaccttgatccacaggtcctg
ggtgccgagctgtacgcttatttcagccgtcacgagcacggtgaaatcgcgcggatccac
gccatgctcgagttgttcgccagcgatcgttgtctcggctatcgcttggcgcagtatttc
ggcgacgagaatgcgcctcggcagtgtggccattgttcggtgtgccatggacatgtcaca
cgcctgccggagccaccttcgttgccggcacttgtggataaaggcttcgaggcgctgtgt
ggcgattttatccacaggcatgagcagcataccggcagcgtgccgtctgcagagcggctg
acccggtttctgtgcgggatcagtgtgccgctgtttaccaaactgaaggcgcggacgatc
cggggatacgccgctttggaggagtatccgtacgctgaagttcgccagtggacccaggcg
catttgtga
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