Pseudomonas viciae: EPZ47_26810
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Entry
EPZ47_26810 CDS
T07167
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pvk
Pseudomonas viciae
Pathway
pvk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EPZ47_26810 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvk03021
]
EPZ47_26810 (rpoB)
03400 DNA repair and recombination proteins [BR:
pvk03400
]
EPZ47_26810 (rpoB)
Enzymes [BR:
pvk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EPZ47_26810 (rpoB)
Transcription machinery [BR:
pvk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EPZ47_26810 (rpoB)
DNA repair and recombination proteins [BR:
pvk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EPZ47_26810 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QBZ92156
UniProt:
A0A4P7PN12
LinkDB
All DBs
Position
complement(6025664..6029737)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVQGEN
LSLELVPQRLRGEIAVLDIQDDKGKVIVEQGRRITARHINQLEKAGIKELQVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS
TGNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLNKDDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQEITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELDTFTDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gagccggcatttgatgtcaaagaatgcgtattgcgcggtgtaacttacgccgtacctttg
cgggtaaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gtaatcaacggtaccgagcgtgtaatcgtttcccagctgcaccgttctccgggcgtgttc
ttcgaccacgaccgtggcaaaacgcacagctccggcaaactgctttactccgcgcgcatc
attccttaccgcggttcgtggttggacttcgagttcgatccgaaagactgcgtattcgtg
cgtatcgaccgtcgtcgcaagctgcctgcatcggtactgctgcgcgcgctcggttatacc
actgaagaagtattggacgcgttctacaccaccaacgttttccacgtgcagggtgaaaac
ctcagcctggagctggtgcctcagcgtctgcgcggtgaaatcgctgtcctcgatatccag
gatgacaagggcaaggttattgtcgagcagggtcgtcgtattaccgctcgccacatcaac
cagctggaaaaagccgggatcaaagagctgcaggtgcctctggactacgtcctgggtcgc
accaccgccaaggtcatcgtgcatccggccaccggcgaaatcctggcagagtgcaacacc
gagctgaacaccgagatcctggcaaaaatcgccaaggcccaggttgttcgcatcgagact
ctgtacaccaacgatatcgactgcggtccgtttatctccgacacgctgaagatcgactcc
actggcaaccaactggaagccttggtcgagatctatcgcatgatgcgtcctggcgagccg
ccaaccaaggatgcagccgagactctgttcaacaacctgttcttcagccctgagcgctac
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgttgaataaagacgacatcgttgcggtgctcaagactctggtcgacatc
cgtaacggcaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgt
gtaggcgaaatggccgagaaccagttccgtgttggcctggtgcgtgtagagcgcgcggtc
aaggaacgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacttgatcaacgcc
aagccagtggctgcggcggtgaaggagttcttcggttcgagccagctgtctcagttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgtcgtgtctctgcactcggcccg
ggtggtttgacccgtgagcgcgcaggcttcgaagttcgtgacgtacacccgactcactac
ggtcgtgtatgcccgattgaaacgccggaaggtcctaacatcggtctgatcaactccttg
gccgcctatgcgcgcaccaaccagtatggcttcctcgagagcccataccgtgtggtgaaa
gacgccctggtcactgacgagatcgtattcctgtccgccatcgaagaagccgatcacgtg
atcgctcaggcttcggccacgatgaacgacaagaaagtcctgatcgacgagctggtagct
gttcgtcacctgaacgagttcaccgtcaaggcgccggaagacgtcaccttgatggacgtg
tcgccgaagcaggtcgtttcggttgcagcgtcgctgatcccgttcctcgagcatgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaagctgtaccaaccctgcgcgcc
gacaagccgctggtaggtaccggcatggagcgaaacgtagcccgtgactccggcgtttgc
gtcgtggctcgtcgtggtggcgtgatcgactccgttgatgccagccgtatcgtggttcgt
gttgccgatgacgaagttgaaacgggcgaagccggtgtcgacatctacaaccttaccaaa
tacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgat
cgggttcagcgtagcgacatcatggccgatggtccgtccaccgatatgggtgagctggca
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgttgttcaggaagatcgcttcaccacgatccacatccaggaa
ctgacctgtgtggctcgtgacaccaagcttggcccagaggaaatcactgcagacatcccg
aacgtgggtgaggctgcactgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagtaggcgcaggcgacatcctggtcggtaaggtcactccgaaaggcgagacccagctg
actccggaagagaaactgctgcgtgccatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgcgtgcctaccggcaccaagggtaccgtcatcgacgtacaggtcttcacc
cgtgacggcgttgagcgtgatgctcgtgcactgtccatcgagaagactcaactcgacgag
atccgcaaggacctgaacgaagagttccgtatcgttgaaggcgcaactttcgagcgtctg
cgctccgctctggtcggccacaaagccgaaggcggcgccggcctgaagaaaggtcaggaa
atcaccgacgaagttctcgacggtcttgagcacggccagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggcccaggcctatatcgttgatcgccgccgt
ctgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggct
ccgggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgtcgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgatgtggtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggccaaaggt
ctgggcgagaagatcaaccgtatgatcgaagagcagcgcaaggtcgctgacctgcgtaag
ttcctgcacgagatctacaacgagatcggcgggcgcaacgaagagctggacaccttcacc
gaccaggaaatcctggacttggcgaagaacctgcgcggcggcgttccaatggctactccg
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgcca
gaaagtggccagatgcagctgttcgacggccgtaccggcaacaagttcgagcgcccggtt
accgttggctacatgtacatgctgaagctgaaccacttggtggacgacaagatgcacgct
cgttctaccggttcttacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcgtacggtgctgcatac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccggaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtctttcaacgtg
ttgatcaaggaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
