Proteus mirabilis CYPV1: AOB99_06685
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Entry
AOB99_06685 CDS
T04093
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pvl
Proteus mirabilis CYPV1
Pathway
pvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOB99_06685 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvl03019
]
AOB99_06685 (rne)
03009 Ribosome biogenesis [BR:
pvl03009
]
AOB99_06685 (rne)
Enzymes [BR:
pvl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AOB99_06685 (rne)
Messenger RNA biogenesis [BR:
pvl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AOB99_06685 (rne)
Ribosome biogenesis [BR:
pvl03009
]
Prokaryotic type
rRNA processing factors
AOB99_06685 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
ALE25083
LinkDB
All DBs
Position
complement(1473346..1476480)
Genome browser
AA seq
1044 aa
AA seq
DB search
MPNNPRAGGISRRIEGEDRTELKEALSSLDIPDGMGLIVRTAGVGKSAEALQQDLSYRLR
HWDAIKKAAESRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNAKVVEMARSHIEAIGR
GDFASKIRHYTGAVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRS
TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQ
DRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCLGTGTIRDNESLSLSVLRLIEE
EALKENTHEVHAIVPVQIASYLLNEKRKAVTDIELRQANVKVVIVPNDQMQTPHFSVIRV
RKGEEISSLSYNLAQYHETQLNEAEDEAVPERKAPEQPAISAFALQDNSADTTNKKKSAP
TPAKQVKKSETTESGGFFSAIAKFFSNLFASQPEPVVEEKPQESKKENNENRRERRNNNN
RRNNNRRERDNDRNRDHERNRDNVTSEENRKNRNQKAQNANTEVSNEQEIAEREARRQQR
REQRAEQRRRQEEKRQQQQEAAKAAQNTAENDNAAKQAEKKEEPRRPVMPRRARRQLTQS
VRVTDAVATPAIDVAVSDSPVSEPPATVVSQLPSSEKQQVAKPVATIKDEQEQVSANALT
DTVKAQEEVKKEENAGQQENVMPRRSRRSPRHLRVSGQRRRRYRDERTLVSPMPLTMAVA
SPELASGKVCIHYPVTPISDAPFVDNNVENSTDNTVAKNFITHKDPQMVAIAPEVSETIA
ADVAQAQTANTEATEATYSVTVSTESTTEAVAEIVAIAPQETTADVNESTADHVEENAVN
NVIADVNTQEHVTRKENISAVLNTTEAYLHEVTAQADVAEEKTETAHNKVIANADHETAS
EDTHSDMTTQAPVPEMPATTQASTECAAEQHVEQTASQSTPVETQPEVTEPVAETKTETE
VVSVEVKQPAKVTVIRQEPTVRQLHASSPMTKAPASTDAPVAIEIKAWDARPAFDKQGRS
GAGGHCSTNHASSEMTKASTHSES
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgccaaataaccctcgtgctggcggtatttctcgtcgtattgaaggggaagatcgcact
gaattaaaggaagcgttatctagccttgatattcctgatggaatggggttaattgttcgt
actgcaggtgtgggtaaatccgcagaagcattacaacaagatttaagctaccgtttaaga
cattgggatgctatcaaaaaagcagcggaaagtcgccctgctccttttctgatccaccaa
gaaagtaacgtgattgtacgtgctttccgtgattatttacgaccagatattggtgagatc
ttaattgataacgctaaagtagttgaaatggctcgtagccatattgaagccattggtcgt
ggtgactttgctagcaaaattcgccactacacaggggctgtaccactatttagtcactac
caaattgaatctcaaattgaatcagccttccaacgtgaagtccgtttaccttcgggtggc
gctctggttattgatacaacagaagcattaaccgctatcgatattaactcatctcgttca
acacgaggtggcgatattgaagagacagcctttaacactaacttagaagctgctgatgaa
attgcgcgccaactccgtctacgtgaccttggtggtttgattgttatcgactttatcgat
atgacccctgttcgtcatcagcgtgaagtggaaaatagaatgcgtgaggctgtgcgccaa
gatcgcgcacgtattcaaataggtcgcatttcgcgtttcggcttattagagatgtcacgt
cagcgtttaagtccttcattaggtgaatcaagccatcatgtttgtccgcgttgtttaggc
acagggactatccgtgataatgagtcactttctctttctgtattgcgtcttatcgaagaa
gaagcattaaaagaaaatactcatgaagtacacgctattgtgcccgtacaaattgcctct
tacttgctcaatgaaaaacgtaaggcagtcaccgatattgagttgcgccaagccaatgtc
aaagtagtgattgttcctaatgatcaaatgcaaacaccgcatttctcagttattcgtgtg
cgcaagggcgaagagatctcttcattaagctacaatttagcgcaatatcacgaaactcag
ttaaatgaagcagaagatgaagccgtacctgagcgtaaagcgccagagcaaccggcgata
tccgcttttgcattacaagataatagcgctgacaccaccaataagaaaaaatctgcacca
actccagctaaacaggtgaagaaaagcgaaacaacagagagtggtggattctttagtgct
attgcaaaattcttctctaacttatttgcgagtcagccagagcctgtcgttgaagaaaaa
ccgcaagaaagcaaaaaagagaataatgaaaaccgtcgtgagcgccgaaataataacaat
cgtcgcaataataaccgccgtgaacgcgataatgatcgcaatcgtgaccacgagcgcaat
cgcgataacgtaacgagcgaagaaaatcgtaagaaccgtaatcagaaagcgcaaaatgcc
aatactgaagtcagtaatgagcaagaaatcgctgaacgtgaagcccgtcgtcaacaacgc
cgtgaacaacgtgcagaacaacgtcgtcgtcaggaagaaaaacgtcagcaacaacaagaa
gctgcgaaagccgcacaaaatacagcggaaaatgacaatgcagcaaaacaggctgagaag
aaagaagaacctcgtcgccctgttatgcctcgtcgtgctcgccgtcaattaacgcaatct
gttcgtgttactgatgctgtcgcaacacctgctattgatgttgctgtgagcgactcaccg
gtttctgagccaccagcgacagtggttagtcaattaccatcatcagaaaaacagcaagtt
gcgaaaccagtagcgacgattaaagatgagcaagaacaagtttctgctaatgcgttaact
gatactgtaaaagcacaagaagaagtgaaaaaagaagagaatgcgggccaacaagaaaat
gtgatgccacgtcgctctcgccgttcacctcgtcatttacgtgttagtgggcaacgtcgt
cgccgttatcgtgatgaacgtacattagtctcccctatgccgctaacgatggccgtagct
tctccagagcttgcgtcaggtaaagtatgtattcattaccctgtcacaccaattagtgat
gcaccatttgttgacaataatgttgaaaatagcactgacaatacagttgctaaaaacttc
attactcataaagatccacaaatggttgctattgcaccagaagtatcagaaaccattgct
gcagatgttgctcaggctcaaacagcaaatactgaagcaactgaagcgacttattcggtc
acagttagtactgaatcaaccactgaagctgtagctgaaattgtcgcgattgcaccgcaa
gaaacgactgctgatgttaatgagtcaactgccgatcatgtagaagaaaacgctgttaac
aacgttattgctgacgttaatacccaagagcatgttactcgtaaagagaatatctctgcg
gtattaaatacaacggaagcttatctacatgaagtgactgcgcaagcagatgttgccgaa
gagaaaacagaaaccgctcataataaagtcatagctaatgctgatcatgaaaccgctagt
gaagacacccatagtgacatgacaacgcaagcgcctgtacctgagatgccagcaacaacc
caagcatcaactgaatgtgcggctgagcagcatgtagagcaaactgcttctcaatctaca
cctgtagaaacacagcctgaagtgaccgagcctgttgctgaaactaaaacggaaaccgaa
gtcgtatcggttgaagttaagcagccagctaaagtgaccgttattcgtcaagagccaaca
gtacgccagttacatgccagctcgccaatgacgaaagctccggcatctacagatgcgcct
gtagcaattgaaatcaaagcatgggatgcacgtccagcctttgataagcaaggccgtagc
ggtgcgggtggtcattgttcaactaatcatgcttcatctgaaatgactaaagcgtcaacg
catagtgagtcataa
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