Proteus mirabilis CYPV1: AOB99_06815
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Entry
AOB99_06815 CDS
T04093
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pvl
Proteus mirabilis CYPV1
Pathway
pvl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AOB99_06815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvl03400
]
AOB99_06815
Enzymes [BR:
pvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOB99_06815
DNA repair and recombination proteins [BR:
pvl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AOB99_06815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
VanY
Motif
Other DBs
NCBI-ProteinID:
ALE25109
UniProt:
A0A7D6AGT3
LinkDB
All DBs
Position
complement(1497408..1500863)
Genome browser
AA seq
1151 aa
AA seq
DB search
MSSEYRYQLPVKQGDTRQLGQLTGAACALECAEIIKRHAGLVVLVTRDMQNALRLQDEIR
QFCDYPVETLSDWETLPYDSFSPHQEIISNRLSTLYRIPSLLKGILILPVNTLMQKVCPT
DYLASHALIMSKGEQLSRDNLRKTFDEAGYRHVEQVLEHGEYATRGALLDLFPMGSEFPY
RIDFFDDEIDSLRTFDVDTQRTLTEVEQIKLLPAHEFPTDPNAIELFRSQWRERFEVRRD
PEHIYQQVSKQVLPAGIEYWQPLFFSQPLSNLFAYFPQNTLIVTQDLQDCADKFWQDINQ
RYESRRVDPMRPLLPPDDIWLNVETLNQQLKQWPRIQLKTQALPEKAGYTNLGYQPLPDL
SVNAQSKSPLDNLRRFQEQFSGSIVFSVESEGRRETVQELLSRIKIAPKQIIELADAKEK
GCYFIIGSAEHGFIDNYRQLALICESDMLGERVHRRRQDNRRTINTDTLIRNLAELSPGQ
PVVHLQHGVGRYQGMTTLEAGGVKAEYLILSYAGDDKLYVPVSSLHLISRYSGGADENAP
LHKLGGDAWTRARQKAAEKVRDVAAELLDVYAQRAVKSGFAFKLDKEQYHTFRQSFPFET
TPDQEMAINAVLSDMCQAIAMDRLVCGDVGFGKTEVAMRAAFLAISNNKQVAILVPTTLL
AQQHFENFRDRFANWPVNIEMISRFRSAKEQQQITEKLAEGTIDIVIGTHKLLQPGIQWK
DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA
RRLSVKTFVREYDDLVVREAILRETLRGGQVYYLYNDVENIEKARDRLAQLVPEARIGIG
HGQMRERELERVMNDFHHQRFNVLLCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRG
RVGRSHHQAYAYLLTPHPKAMTKDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE
EQSGQMNTVGFSLYMELLESAVEALKEGREPSLEDLTNQQTEIELRMPVLLPDDYIPDVN
VRLSFYKRIASAKDLNELNDLRAELIDRFGTLPDAGRNLLRNAAIRLSAMSLGISRIEAH
DKGGFIEFGEKNNVDPTYLIGLLQEQPSVFRLDGPTKLKFMISLTDREKRLTFIDDMLTA
FSEHKINALSV
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagaatatcgttatcaacttcctgtaaaacaaggggatactcgccagctgggt
cagctgacaggtgccgcttgcgccctagaatgtgcagaaatcattaaacgtcatgctgga
ttagtcgttcttgtcactcgtgatatgcaaaatgcactgcgtttacaagatgaaatccgt
cagttttgtgattatcctgtagagacattatctgattgggaaacattgccttacgacagt
ttttctccccatcaagaaataatctctaaccgcctttctacgctataccgtattccatca
cttctcaagggaattttaatcttacccgtcaatacgttaatgcaaaaagtctgcccaaca
gattatctcgcaagtcatgcattaataatgagtaaaggagagcaactttctcgcgacaat
ttacgcaaaacatttgatgaggcgggttatcgtcatgtagaacaagtattagaacatggc
gagtatgcaacacgcggcgcattacttgacctattcccgatgggcagtgaatttccttat
cgaattgacttttttgatgatgaaatagatagcctaagaacttttgatgttgatacgcaa
cgcaccttaacagaagtcgagcagatcaaactattaccggctcatgagtttccaactgat
cctaatgcgattgaactctttcgtagccaatggcgtgaacgttttgaagtaagacgtgat
cctgaacatatctatcaacaagtaagtaagcaagtattacccgcaggaattgaatactgg
caaccgctcttttttagtcagccattatccaatttatttgcttatttcccacaaaacacc
ttaattgtgacgcaagatctgcaagattgcgctgataaattttggcaagatatcaaccaa
cgttatgaaagccgtcgtgttgatcccatgcggccattactgccaccagatgatatttgg
cttaatgtcgaaacgctcaatcaacagttaaaacagtggccacgtattcaacttaaaacg
caagcactgccggaaaaagcgggttataccaatttaggttatcaaccactgcctgattta
tcagtcaatgcacaaagtaaatcaccgcttgataatctacgccgtttccaagagcaattt
tctggcagtattgttttttcggttgaaagtgaaggccggcgggaaaccgttcaagagctc
ttatctagaattaaaattgcccccaaacaaattattgaattagcggatgctaaagagaaa
gggtgttattttattattggctctgcagagcatggctttattgacaattatcgtcagtta
gcgctgatctgcgaaagtgatatgttaggtgagcgagtccaccgtcgccgtcaagataat
cgtcgcaccatcaataccgatacactgatccgcaatctggcagaattaagtcccggacaa
cctgttgtccatcttcagcatggggtgggtcgttatcaaggtatgaccaccttagaagcg
ggtggcgtaaaagcagagtacttgatcctctcgtatgcgggagatgacaaactctatgtt
cctgtttcgtcactgcatttgatcagtcgctactctggtggggcggatgaaaatgcacct
cttcataaattagggggtgatgcttggactcgtgcgcgccaaaaagcagctgaaaaagtg
cgtgatgtggcggcggaattattagatgtctacgctcaacgagccgttaaatctggtttt
gcgtttaaattagataaagaacaatatcacactttccgccaaagcttcccttttgaaacc
acccccgatcaagagatggcaattaatgccgtattaagtgatatgtgccaagccattgcc
atggataggttagtatgtggtgatgttggttttggtaagacagaagttgctatgcgtgcg
gcatttcttgcaataagcaacaataagcaagtggctattttggtgcctactaccctactg
gctcaacaacactttgaaaactttcgtgatcgctttgctaactggccggtcaatattgag
atgatctcacgttttcgtagtgccaaagagcaacagcagatcaccgaaaaattagcagaa
ggcaccattgatatcgttattggtacacataaattattacaaccgggcattcaatggaaa
gacttagggttattaattgttgatgaggagcatcgcttcggtgtacgtcataaagagcgt
attaaagcaatgcgtgccaatgtcgatatattaaccttaacggccacccctattcctcgt
acgctaaatatggcgatgagtggtatgcgtgatctgtcaattattgccaccccacccgct
cgccgtttatccgttaaaacatttgtccgcgaatatgatgatctggttgttagagaggct
atcttgcgtgaaacattacgtggcgggcaagtgtactatttatataacgatgttgaaaat
atagagaaagcgcgtgataggctagcacagttagtacctgaagctcgtattggtattggc
catgggcaaatgcgtgaacgtgagcttgaacgtgtgatgaacgattttcaccatcaacga
tttaatgtattgctctgcaccaccattatagaaacgggtattgatattccgagtgccaat
accattattattgaacgtgctgatcactttggtttagcgcagctacaccaattacgtgga
cgcgttggtcgctctcaccatcaagcctatgcttatctattaacccctcatcccaaagca
atgactaaagatgcccataaacgcttagaagcgattgcctccctagaagatctcggcgca
ggttttgctttagctacacatgatctagaaattcgtggtgcgggagagctattaggtgaa
gagcaaagcggtcaaatgaataccgttggcttctctttatatatggagttactagaaagt
gccgttgaagcattaaaagagggtcgagagccatcattagaagatctgaccaatcagcaa
accgaaattgaattaagaatgccggtgctattgcccgatgactatattcctgatgtcaat
gtaagactctctttctataaacgtattgccagtgccaaagacttaaatgaacttaatgat
ctaagggcagagcttattgatagattcggcaccttacctgatgcaggacgcaacttatta
cgtaatgcggctattcgattaagcgccatgagtttaggtatatctcgcattgaagcccat
gacaaaggtggctttattgagtttggtgaaaaaaataatgtcgacccgacttatttaatc
ggtttattgcaagagcaaccgagcgtcttccgtttagatggccctaccaaattgaaattt
atgataagcctaaccgatcgagaaaaacgactcacttttatcgacgatatgctcaccgct
tttagtgaacacaaaataaacgcattgtctgtttag
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