Penaeus vannamei (Pacific white shrimp): 113799998
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Entry
113799998 CDS
T06111
Symbol
Pms2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03430
Mismatch repair
pvm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113799998 (Pms2)
03460 Fanconi anemia pathway
113799998 (Pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvm03400
]
113799998 (Pms2)
DNA repair and recombination proteins [BR:
pvm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
113799998 (Pms2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
113799998
NCBI-ProteinID:
XP_027206517
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Position
19:2115694..2124405
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AA seq
997 aa
AA seq
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MDELEGVDVIESNGEAAPTTQAAKSIKAIDRTTVHKICSGQVVLTLGTAIKELVENSIDA
GATSVEIRLRDHGISLIEVIDNGKGVEESDFEGLTLKHHTSKIQDFGDLVGVKTFGFRGE
ALSSLCALSDLTIATRHESQAVATKLVYDHNGKLITKTPCPRQVGTTVTLQNLFSTLPVR
HKEFQRNIKKEFGKMVQVLNSYCLISTGIRISCTNQSDKGKKSVVLSTNGHPTIKENISS
VFGAKQVSSLMEFKQETASDDILSEYGMQCSSEDIKGNTLFTLEGFISSCEHGQGRSASD
RQFYFINSRPCDPAKVIKVVNEVYHQYNRYQYPCVVLNIRLKEDDVDINVTPDKRQILVN
NEKLLLATIKTSMIRLYGNIPNSFKMQNTSLNNSFTSSQSNNTPSRASPSVGSPSNSRIS
ALSQKFGRKSEGSPLSNLSPTQPSTPLSVFSLKRSFSNSSCTDESPSNKQPKLESFLAKC
KSDPGKNPVTSIKSEEDDKSFLSDFTPLENHEIVTNGDKNDIENNDAVKEECEDMEGGRK
MVKSEILESDEKEIMPPDSANETNSIKTEDNQQEMSLVLESELVNGDFGNSEDNDEIGNS
QQSDSFANNNNEKNSLKSDELRNPQLSSGSSKGPDLKSGLSQFSRSASVTSQSCKKAHSA
TDNFLNSLLAKKSQNKYVKEPSIPSTNGYKHDAVDVREQKDEGTVEDTDFAETWEDDFYE
DSAPEEEKTNEKTIVCEEYDPNDFIANRKSRTIEFNVEDIRKKLNIGTSTEKERPGELVR
KFRAKIAPGENTSAEDELRKEISKDMFAKMEILGQFNLGFIIARFGSDLFIIDQHATDEK
YNFETLQATCTIQNQRLIAPQQLELTAANETVLLDNLEIFLKNGFEFKIDEEKPMGQRVS
LISMPHSRGWEFGRDDIDELIFMLSDSPGVMCRPTRVRAMFASRACRKSIMIGTALTKAQ
MQKLVCHMGEIDQPWNCPHGRPTMRHLINLDMVTASR
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggacgaattggaaggagtcgacgtaattgaaagtaatggagaagcagctccaactaca
caggctgctaagtctatcaaagcaatagacagaacaacagttcataagatatgctctggt
caggttgttttaacacttggaacagctatcaaagaacttgtggaaaatagcatagatgct
ggagctacaagcgtagagatccgccttcgagatcatggcatttccttgattgaagttata
gataatggaaagggagtggaagagagtgactttgaagggctgactttaaaacatcatacc
tcgaagatacaagactttggggacttggttggagtgaaaacctttgggttccgaggtgaa
gccctgagttccctgtgtgcccttagtgacctcacaattgcaacccggcacgaaagtcaa
gcagttgccactaaactagtttatgaccataatggcaaacttattaccaaaactccttgc
cctagacaggttggaacaactgtcactctgcagaacctgttctcaaccttgccggtaaga
cacaaggaattccagcgtaatatcaaaaaggagtttggcaagatggtacaggtcctgaat
tcatactgcctaatatccactggaattaggatatcatgtacaaatcagagtgataagggc
aaaaaatcagttgtgctgtcaacaaatggacatccaacaataaaggagaacatctcatca
gtatttggagcaaaacaggtttcaagccttatggaattcaagcaggaaacagcatcagat
gacattttgtctgaatatggcatgcagtgctctagtgaagatatcaaagggaatacatta
tttaccttggagggattcatttcgtcctgtgaacatggacagggacgttcagcttctgat
cgccagttctattttatcaactctcgtccatgcgatccagcaaaagtcatcaaggtcgtg
aatgaggtatatcatcagtataaccgctaccagtatccttgcgttgtgctcaacattcgt
ttgaaagaggatgatgtggacatcaatgtgactccagacaagagacagatattagtcaat
aatgagaagcttttacttgcaacaatcaagacctcaatgattcgtctctatggaaatata
ccaaattctttcaagatgcagaacacatctctcaacaactctttcacttcatcacaaagt
aataataccccatcaagagcaagccccagtgtagggagtccatccaatagtaggatctca
gcgcttagccagaagtttggtcgcaaatctgaaggctctccactgtcgaacctctcccct
acacaaccttcaactccactttcagtatttagcctcaagaggagcttttcaaacagttct
tgtactgatgaaagcccaagtaataaacaaccaaaacttgaatctttcctggcaaaatgc
aagtctgatcctggaaaaaatcctgttaccagcataaaatctgaagaagacgacaaaagc
tttctttcagatttcaccccactggaaaatcatgagattgttacaaatggagataagaat
gatattgagaataatgatgcagttaaagaagagtgtgaagacatggaaggtggaaggaag
atggtaaaaagtgagattcttgaatctgatgaaaaagaaatcatgccaccagacagtgca
aatgagacaaattcaataaaaactgaagataaccagcaggaaatgtcattggtactggaa
tctgagcttgtaaatggagattttggtaattcagaagataatgacgagataggcaacagc
cagcaaagcgacagttttgcaaataataacaatgaaaaaaattcattaaaaagtgatgaa
ctaagaaatcctcagttatccagtggttcttcaaaaggtcctgatttaaagagtggtcta
tctcaattttctaggtctgcatcagtaacatctcaaagctgtaagaaggctcatagtgct
acagataatttcttgaatagtcttttagcaaagaaatcacagaacaaatatgtaaaagaa
cccagcataccatctaccaatggatacaaacatgatgctgtagatgtaagagaacagaaa
gatgaaggaacagttgaggacacagactttgcagagacctgggaagatgacttttatgaa
gatagtgcaccagaagaggagaaaacaaatgaaaagactattgtgtgtgaagagtatgat
ccaaatgactttatagcaaacagaaaatctagaacaattgaatttaacgttgaagacatc
aggaagaaattgaacataggtaccagtactgaaaaagaaagacctggagaattagtcaga
aagttccgagccaagattgccccaggtgaaaatacttcagcggaagatgagctgaggaaa
gagatctcaaaagacatgtttgcaaagatggagattttgggtcagttcaatttgggattc
atcatcgcccgctttggctcagatcttttcataattgaccagcacgcaactgatgaaaag
tacaactttgaaactctccaagcaacttgcacaattcagaatcagaggcttattgcccca
caacaactggaactgacagcagctaatgagacagtcctgttagataatttggagatattt
ttgaaaaatggatttgagtttaagatagatgaagagaaaccaatgggacaaagggtgagc
ctaatttcaatgccccatagccgaggttgggagtttggacgagatgacattgacgaattg
atattcatgttatctgactctcctggggtaatgtgtagaccaactcgtgtcagggcaatg
tttgcttcaagagcttgccgcaagtctattatgattggtactgcattgacaaaagcacag
atgcagaaactggtttgccatatgggtgagattgatcagccgtggaattgtccacatggt
aggccaacaatgaggcatttgataaatcttgatatggtcactgcatcaagatga
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