Penaeus vannamei (Pacific white shrimp): 113800029
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Entry
113800029 CDS
T06111
Symbol
TH1
Name
(RefSeq) negative elongation factor D isoform X1
KO
K15181
negative elongation factor C/D
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
113800029 (TH1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvm03021
]
113800029 (TH1)
Transcription machinery [BR:
pvm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
NELF complex
113800029 (TH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TH1
DUF7484
Motif
Other DBs
NCBI-GeneID:
113800029
NCBI-ProteinID:
XP_069970406
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All DBs
Position
3:50999063..51011356
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AA seq
582 aa
AA seq
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MGRKNIMEEEFESRAWDDAPDTEPLEEDEALSPADVQSNCLRQFSSTDFIMEPGIFSTLK
RYFQAGGNPEQVIEMLSENYQAVAQMANLMAEWLILAGASINDVQAMVENHLKQMILKTF
DPKKADTIFTEEGDAPAWLTELIEHSTWRSVVYKLAEEFPDCLMLNFTIKLISDAGFQGE
ITSISTAAQQIEVFSRILKTSTSTFLQSPEDTRHKAVVEFAKMVCHGQHTYIYAQVMLQI
LAQETKGGNNIRRLQQEITKYAINNGHNVTPIQLALNGAMTHPRAAQALAPMLSRNALNP
ADITVLFKLYSSQDPPLVELIRIPQLLELLIDALFKPGSKVNQEHKGKYIYLLAYSASVY
ETPKKGSRPRQVNRDDLKPTQQAIEKVHNICQGGKSAMELIAEINTLYQCIRFPVVSVGL
VRWIECVVKEPSYFKLCTETTPTHLALLDEVVSIHLLLHSRVLNLLIELFESEFQDLEIL
VQLELRKMLLDRMVNLLSRGCVLPVMKYIKSCYTKGDTDISLIRYFVREVLEIVAPPYTV
EFVQLFLPLVENEDITGSMKMNTDSDLVTEFIAHCKSNYYVV
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggggcgaaaaaacatcatggaggaggagtttgaatcaagagcttgggatgatgcccca
gacacagaaccactcgaggaagatgaggcactcagcccagctgacgtgcagtcgaactgc
ttacggcagttttcaagcacagatttcatcatggaacctggtatattttctacccttaaa
aggtatttccaggctggtggcaatccagagcaggttattgagatgttgtccgagaattac
caggctgttgcacagatggctaaccttatggctgaatggcttatcttggcaggtgcaagc
ataaatgacgtgcaagcaatggttgaaaaccacctgaagcagatgattctcaaaactttt
gatccaaagaaagctgatacaattttcacagaggagggagacgccccagcatggttgaca
gagttgatagagcacagcacgtggcgatcagtggtatacaagttagcagaagagtttccc
gactgccttatgttgaacttcacaatcaagctgatttcagatgcaggtttccaaggagaa
attacaagcatatcgactgcagcacaacaaattgaagtgttctccagaattctcaagact
tctacatccactttccttcagtccccagaagacacgagacacaaagctgtcgtggaattt
gctaaaatggtgtgtcacggtcagcatacgtacatctacgcacaggtcatgttgcagatc
cttgcccaagaaacgaagggaggaaataacattcgaagattgcagcaagagattactaaa
tatgctattaacaacggccacaatgtaacccctatccagttggctctgaatggtgcgatg
acccaccccagagcagctcaggctttggcccctatgctttcacgcaatgccttaaatcca
gccgatattactgtactcttcaagttgtacagttcccaagaccctccgttggttgagttg
atacgtataccacaattattagagttgctgattgatgctttgttcaagcctgggagcaag
gtcaaccaggaacacaaagggaaatacatatacctccttgcttacagtgcgagtgtctat
gagactcccaaaaagggtagccgtcccagacaggtgaacagagatgatttaaagcccaca
cagcaagccattgagaaggtccacaacatatgtcagggtgggaagtctgcaatggaactt
atagcagagattaatacactgtatcagtgtatcaggttccctgtggtgagcgttggtctc
gtccgttggattgagtgcgtcgtaaaggaaccaagttatttcaagctctgcacagagaca
acaccgactcatcttgccctgctggatgaggtcgtttccatacacctcctcctccacagt
cgagttctcaatctcctcatagaactctttgagtcagaattccaagacctagaaattctt
gtacagttggagctgcggaagatgctgttggaccgaatggtgaatctcctgagcagagga
tgcgttctcccagtgatgaagtatatcaagagctgttacactaagggagacaccgacatc
tcccttatccggtacttcgttcgagaggtgttggagattgtggcaccgccatacactgtt
gagtttgtgcagttgttcctccctttggttgagaatgaagacatcacaggttcaatgaaa
atgaatactgacagtgatcttgtcacagaatttatagcacactgcaagtccaactactat
gttgtttaa
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