Penaeus vannamei (Pacific white shrimp): 113800687
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Entry
113800687 CDS
T06111
Symbol
hfp
Name
(RefSeq) poly(U)-binding-splicing factor PUF60
KO
K12838
poly(U)-binding-splicing factor PUF60
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113800687 (hfp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvm03041
]
113800687 (hfp)
Spliceosome [BR:
pvm03041
]
Complex A
U2 snRNP components
U2 related factors
113800687 (hfp)
Complex B
113800687 (hfp)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
113800687
NCBI-ProteinID:
XP_069976660
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All DBs
Position
4:complement(4807993..4833510)
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AA seq
670 aa
AA seq
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MCPRCLSAVIKMATDVSAPLSQSMLSNGHNLMMNGETDPIQPAEKKMRVNEEGTARARSP
LREVDQSGSLVLGAGAKKDDIVHLLGQSLPRLSSDQKDAVARAKKYAMEQSIRLVLMKQT
LAHQQQQAKSLQRHQALVLMCRVYVGSISFELKEDTIRQAFVPFGPIKSINMSWDPVTQK
HKGFAFVEYEMPEAAQLALEQMNGVMIGGRNIKVGRPSNMPQNWSTAQGHSACDVAQPRQ
LITRTTDGASIMAQTVIDEITEEANYYNRIYIASVHQDLSETDIKSVFEAFGKIKQCMLT
PGTTPGKHKGYGFIEYENSQSAQEAIASMNLFDLGGQYLRVGKAITPPGSCYVSFGVNGP
LSAPTQMPTAAAVAAAAATAKIQAMDALATNAIGLVQGLSSSPNSMSQIPPVGVVGSVPP
IGSVSSVSPGGVTVPPVGVVGGTPPVASVPPVGVVTSLPTNIGTSSSSGTAIPPPTVLTS
LPVPGSSGSSPAPLPSATSNASTPSVAGSTPSSTSNASAVGEDRKPTHQEELAKKLMEDN
EPQTLQQQETMSIKGQSARHLVMQKLMRKAESNVLILRNMVGAEEVDEQLQDEITEECGR
FGTVNHVIIYQERQSDEEDAEVIVKIFVEFANPHETSTAQEALNGRYFGGRLVKAELYDQ
NMYNHNDLSG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtgcccgcggtgtctgagtgcagtaatcaaaatggctaccgatgtgtctgccccgctc
tcccaatcaatgcttagtaatggccataatttaatgatgaatggggaaacagacccaatt
caacctgccgagaagaaaatgagagttaatgaagaggggacagcacgtgcgcggtctccc
ttgagagaagttgaccagtcgggcagtctcgttctgggtgctggagcgaagaaagatgac
atagtccacctcctgggtcagagcctcccacgcctctcctccgatcagaaggatgccgtt
gctcgagccaagaagtatgccatggagcagtccatccgcctggttctcatgaagcagacc
ttggcacaccaacagcagcaagcgaagtctctacaaagacatcaagctctggtgttgatg
tgccgtgtgtacgtggggagcatcagctttgagctaaaagaagatactatacgtcaagct
tttgttccatttggtccaatcaaatccatcaacatgtcatgggatccagtgacacagaag
cacaagggatttgcgtttgttgagtatgagatgccagaggctgcacagcttgccttggaa
cagatgaatggggtgatgattggaggccgcaacataaaagttggacgcccatcaaacatg
cctcagaattggtcgacagcacagggccatagtgcctgtgatgttgcacaaccgagacag
ctaataacaaggacaactgatggtgcaagtattatggcccagacggtgatagatgagatc
acagaggaggcaaattattacaaccgaatctacatcgcctctgtacatcaagacctttct
gagactgacatcaagagtgtgtttgaagcctttggcaaaattaagcaatgtatgttaact
ccaggaactacacctggcaaacataagggctatggctttattgaatatgagaattcacaa
tctgcacaggaagccatagcttccatgaacttatttgacttgggtggacagtatttgcgt
gttgggaaagcaattactcctccaggatcatgttatgtgagttttggtgttaatggtccc
ctatcagcaccaacacaaatgccaactgcagcagcagtggcagctgcagctgcaactgca
aagattcaagctatggatgcccttgcaacaaatgcaattggcctagttcagggtctaagt
agctctcccaactcaatgtcccagataccccctgtgggtgtagttggtagtgtacccccc
atagggtcagtaagcagtgtttccccagggggggtaacagtgccacctgtgggtgttgtt
ggaggaacaccacctgttgcttctgtccctcctgtgggtgtggtcactagcctgccaacc
aacatagggacgtccagctcttctgggactgccattccacctccaacagtcctcacatct
ctacctgttcctggatcctcaggatcttctccagccccattgccctctgcaacttcaaat
gcttcgacgccaagtgttgcgggatcaactccaagctcaacttcaaatgcatctgctgtt
ggtgaagatcgcaagcccactcatcaagaagaattggccaagaagttgatggaagacaat
gagccacaaacattacaacagcaggaaaccatgtcaattaaaggacagtctgctcgacat
cttgttatgcaaaagctaatgagaaaagctgagtcgaatgtcttaatcctacgcaacatg
gttggagcagaagaggtcgatgagcaactacaagatgaaatcacagaagaatgtggacga
tttggaactgtcaaccatgtcattatctatcaagaaaggcagtctgatgaagaagatgca
gaagtcatcgtcaaaatctttgtggagtttgcaaatccccatgaaacctctacagcacaa
gaagccttaaatggccgatactttggtggccggctagttaaagcagagttgtacgaccag
aacatgtataatcacaatgatttgtcagggtga
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