Penaeus vannamei (Pacific white shrimp): 113800899
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Entry
113800899 CDS
T06111
Symbol
HDAC6
Name
(RefSeq) uncharacterized protein HDAC6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvm01009
]
113800899 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113800899 (HDAC6)
04131 Membrane trafficking [BR:
pvm04131
]
113800899 (HDAC6)
03036 Chromosome and associated proteins [BR:
pvm03036
]
113800899 (HDAC6)
Enzymes [BR:
pvm01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
113800899 (HDAC6)
Protein phosphatases and associated proteins [BR:
pvm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
113800899 (HDAC6)
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
113800899 (HDAC6)
Membrane trafficking [BR:
pvm04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
113800899 (HDAC6)
Chromosome and associated proteins [BR:
pvm03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
113800899 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
113800899
NCBI-ProteinID:
XP_069991646
LinkDB
All DBs
Position
20:41384286..41418909
Genome browser
AA seq
2031 aa
AA seq
DB search
MTEDKENVLQPPRKNSGKGARTRRRGSVPVGAGGAKEGEGETGKPRRLAGIRPRISIEEL
RNAYKRQASTPQEEILPMFDPMAKAQESKGVTRGKTGLVYDERMAEHRCLWDANYPECPE
RLTHTLERCRQLRLIERCEPILPRSATEDEILKRHSRSHLYLLWSTKDEKNEEKLETISS
HFDSIYIHPETHELALLAAGSTIDLVDAVMAGKIQNGMALIRPPGHHAMTTEFCGYCFFN
NVALAAQVALEKHKLSRILIVDWDVHHGQGTQQMFYEDPRVLYFSIHRYENGTFWPELRE
SDYDNVGAGQGRGFNFNVPLNKTQMKNEDYLAVFHQVLLPVAYEFNPELVIVSAGYDAAV
GCPEFDPELVLVSSGYDAAVGDEKAKMEITPAFYAHLTSSLMALANGRVAVVFEGGYCLD
SLAEGAALTLSALLGDPCPKLLDPISKPSLSMCESLLNLIYVQRPYWKCFQYQGSFSVHE
KTNGDTGERHIPTLSYLGNATKPLKYDTRNCYPVQSQEAKEKIGLQLARLKQDKPPQMFG
NNRLCLVYDEAMSNHHSLLEKEHPERPERTERIWKTLKQFGIIERATLLQSRYATQQELE
LIHTHEHVNLMASTSAQSEKELLSMQDKYKSIYLHPKSNEAALLAAGSLLQVIDDVCSNK
SLSGIGVIRPPGHHAEQDHPHGFCLYNNVAVAAKYAITHHGCERVLILDWDVHHGNGVQH
AFEADPKVLYISIHRYDHGLFFPSSEDANYDQVGSGEGEGYTVNIPWNKAKNQRRIGSGM
GDAEYMSAMLQVVMPIAYQYDPQLVLVSAGFDAARGDPLGGCRVTPECYGHMTRLLSSLA
GGRMVLALEGGYNLSSISYCMTMCAKALLGDPLPSLESGLVPNKNAVQSISDTIKTHKKY
WTALSFQVDLPVEDVLCQGFGGGAQPVESGASGSEVSSCNVSPVSTPSTASPPYVSAPSS
PDKTWKNGKCKDNGASPQLECNSGRTKCDSEQMDIDITPNPELQKSVRCRVKSEKAASAS
VAEQRDVKAGGMQKQFGSEGSSRMSRRKVGDQGGTGESANHTSTPIRPSRPVKNVGLMLR
AAASCAGIVKGTTAIVTSENTCDACYKATTLDSGSINGILKQCKELKLLHACTRLEPRPA
SEEEILSVHTKETLESHVQRGTCSKSPCLGNPALTAAGSFVELISEVVQGNVLNGLALLQ
ISDHASSGDQIISNNYINNLAVGTQYALDNVGLQRVLIVNWNAQNGYNTQNLFYSDPRVL
MFSVNLTDDRSATKESVDRRGENKGLGYTFDLSLNRDSQSKNFTQGDYLTILHQIILPVA
YEFCPELVLLAIGNDLVHQSPTVSPLIYSHITTMLMPLAQGHLAVMLEVGNAKEITKDIA
AATLSALLDKAVELLPVIYENTSEVQDSVVNMINVQATTWKSLKQHAQASCINAKKQANA
SLTVLCDEQQRIAKAFDGCVTTPTHTLCLAYDEGMMEHFSYDDETHPERPERISCIFQRL
QEFGIVGRCHHVKARLASAAELETVHSPKHIKFMSSLHSKKPRELQGMQNSFESIFFHRQ
TNNAALLASGSLLEVVDSVLRGESRRGLAVIRPPGHHAEKTEPCGFCIYNNVAVAAKHAI
GAHGLSRVLIVDWDVHHGNGIQHMFEDDPQVLYVSIHRYDNGKFFPGSPDANYNRAGTKK
GKGYNVNIPWNKSGMGDGDYMAAMVEVILPIAYQFNPELVLVSAGFDAAVGDPLGGCKVS
PECYGHMTKLLSCLAGGRVIVALEGGYNLNTISYCMTMCAKALLGDPLIPLSQGLAACSS
ACETLNNVVSVHQKFWSALDLQSKGMASSNQKSKKITKPSPSVDLTDRSPEIPDRKTGLD
ELTSTLSQMSLGKEREGAKSTEVVEVKMEEEDGAVGGACATQAEGLNTFLLTEVSGAESM
YAVVPLQWCPHLESVQPVPKSSLDAFSPCEECKDLSENWVCLTCYKVLCGRFVNEHMLMH
GVMEEHYMVLSYADLSVWCYSCDSYIHHEILQEAKRAAHISKFGEDIPGSL
NT seq
6096 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggacaaggaaaatgttctccaacccccacggaagaactcaggaaagggagcg
aggacccggcgacgtgggagtgtcccggtaggagcaggtggagccaaagaaggggagggg
gagacagggaaaccacgccgattggcagggattagaccaagaatctccattgaagaactg
agaaatgcatacaaacggcaagcttccacacctcaggaggaaatattaccaatgttcgat
cctatggccaaggctcaggagagcaaaggagtcacccgtggaaaaactggtctggtctac
gatgaacgcatggccgagcaccgatgtctgtgggacgccaactaccctgagtgtcctgag
agactgacacacaccctagaaagatgtcggcagctgagattaatcgagcgttgtgagcca
atattgccaagaagtgcaactgaagacgagatcctgaaaaggcattctcggtcacatctc
tacctcttgtggagtacgaaggatgagaaaaacgaggaaaaactggaaaccatctcttcg
cactttgactcaatatatattcatccagaaacccatgaacttgcactcttggcagcaggg
agcaccatagatctagtggatgcagtaatggctggaaagattcagaatggaatggctctt
attagacctccaggacatcacgcaatgacgacggagttttgtggttattgtttcttcaat
aatgtagctctggcggctcaggtggccttggagaaacacaagctgtcacgtattctgatt
gtggattgggacgttcaccatggccagggtactcagcagatgttttatgaggatccaagg
gtcttgtacttctccatccaccgctatgaaaatggaaccttctggcctgagcttcgggaa
agtgactacgacaatgttggagctggtcagggtcgaggtttcaacttcaacgtacctcta
aacaagactcagatgaagaatgaggattatttagcagtatttcatcaggtcctccttcct
gtggcatatgagttcaatccagagttggtcatagtgtcagcaggatatgatgcagctgtt
ggatgtccagagtttgatcctgagttggttcttgtttcctctggttatgatgctgcagta
ggtgatgagaaggcaaaaatggagattacccctgccttttatgctcacctcacctctagt
ctcatggctctggcaaatggacgtgtagctgttgtctttgagggtggctactgtcttgat
tcgctagcagaaggagctgctctgacgcttagtgcccttctgggagacccttgcccaaag
cttctggatcccatttccaaaccctcactaagcatgtgtgagtctctgctcaatcttatc
tacgtccagaggccatactggaagtgtttccagtaccaagggtccttctctgtccacgag
aagacgaatggggacacgggagagcgccacatccccaccctctcctacctcggcaatgcg
acaaagccccttaagtacgatacaaggaactgctatcctgtccagtcacaggaggccaag
gaaaagatcgggctccagttagccaggctgaagcaagataaacctcctcagatgtttggg
aataatagactctgcttggtgtatgatgaggccatgagtaatcaccatagtttgttggaa
aaagagcatccagaaagaccggaaagaacagagagaatatggaaaactctgaagcagttt
ggcatcatagaaagagcaactctcttgcagtcacgatatgccacacagcaagagctagag
ctcattcacacacatgagcatgtaaacctaatggcaagcacaagtgcacagagtgaaaag
gagctcttgagtatgcaggataagtacaagtcgatataccttcaccccaagagcaatgaa
gctgctcttcttgccgctgggagcctcttgcaggttatagatgacgtatgcagtaacaaa
agcttaagtggaataggagtaattcgtcctccgggccaccatgctgagcaggatcatccg
catggcttctgtttgtacaacaatgtggccgttgctgctaagtatgccattacccaccat
ggttgtgaaagagtgctgatccttgactgggatgttcaccacggtaatggcgtgcagcat
gcattcgaggctgatccaaaggtcctctacatttccatccaccgttatgaccacggcctc
ttcttcccttcttctgaagatgccaattatgaccaggttggctctggagagggggaaggc
tacacagtcaatattccatggaataaggctaaaaatcaaaggagaatagggagtggtatg
ggagacgcggagtacatgtcagcaatgctacaggtggtaatgccgatagcataccagtac
gacccccagttagtgcttgtgtcggcagggtttgacgcagctcgtggtgacccgcttgga
ggttgtcgtgtcactcctgaatgctatggccacatgaccaggctcttgtcaagcttagcc
gggggccgcatggtcctggcactagaaggcggctacaacctaagcagtatcagttactgc
atgactatgtgtgccaaggctcttctgggcgatcctctaccctcgcttgagtcgggactt
gtgcctaacaagaatgctgtgcaatccatatctgataccattaaaacccataaaaagtac
tggacagctctttccttccaggttgatcttcctgttgaggatgttctgtgccaaggcttt
ggaggtggggcccaacctgtggagtcaggtgcttctggttctgaagtctcttcatgtaat
gtgtctcctgtctccactccgtccactgcatcccctccttatgtctctgctccatcttct
cctgataagacttggaagaatggaaagtgtaaggataacggagcatctccacaattggaa
tgcaactctggaaggaccaagtgtgattcagaacaaatggacatagacattacaccaaac
cctgaattgcagaagtctgtgagatgcagagtgaaaagtgaaaaagctgcttcagcctca
gttgcagaacaaagggatgtaaaagctggaggaatgcagaaacagtttggttcagaagga
agttcaaggatgagcaggagaaaggttggggatcaaggtggcacaggggagagcgctaac
cacacatcgacacccatccggccaagtagaccagtaaaaaatgtaggccttatgctcaga
gctgctgcatcatgtgctggaattgtgaaaggaacaacagctattgttaccagtgaaaat
acctgtgatgcttgttataaagcaaccacactagattctggaagcattaatgggattcta
aaacaatgtaaagaattgaaacttttacatgcatgtacaagattagagccaagaccagca
tctgaggaggaaattttgtcagtccacaccaaagaaacactggaaagtcatgtgcagaga
gggacatgtagcaaaagcccctgtttgggcaaccctgcactgactgcagctggaagcttt
gtagagttgattagtgaagtggtacaggggaatgtgctcaatggtttagctcttttacag
atatctgatcatgccagttcaggtgatcagataattagcaataactacattaataattta
gcagttggaactcagtatgctttagataatgttgggctacaaagggtgctcattgttaac
tggaatgctcagaatggttataatactcagaatcttttctacagtgatccaagagtctta
atgttttctgttaacctcactgatgatcggagtgcaaccaaagagtcagttgacagacga
ggagagaacaagggcctcggttatacctttgatttaagccttaatagagattcccagagt
aaaaacttcacccaaggagattatctcacaatactccaccaaatcatcttacctgtggcc
tatgaattttgcccagagttggttctcttagcaattgggaatgacttagtgcaccaatcc
ccaacagtgtctccactcatttattctcatataactacaatgttgatgcctttagctcaa
ggccatttagctgtgatgttagaggttggaaatgccaaggaaataaccaaagatattgct
gctgccacattgtcagcactgctagacaaagcagtagaacttttgccagtaatttatgaa
aacacatcagaagtacaagattcagttgttaatatgataaacgtacaagcaacaacctgg
aagagtttaaaacaacatgctcaggcctcctgtattaatgcaaagaagcaggcaaatgca
tctttaacagtattgtgtgatgaacagcaaagaattgccaaagcatttgatggttgtgta
actacccccacacatacgctttgccttgcctatgatgagggaatgatggaacacttcagc
tatgatgatgagactcaccctgaaaggccagagagaattagttgcatcttccagcggttg
caagaatttggcattgttggccgctgccaccatgtgaaggcaaggttagcctcagcagca
gagttagaaactgtccacagccctaagcacatcaaatttatgtcaagtttacacagcaag
aagccgagagagttgcaaggaatgcagaacagctttgaatccatcttcttccatcgtcag
acaaataatgctgctcttttggcttcaggctctctcctggaagtagttgacagcgttcta
agaggtgaaagccgacgtggactcgcagttatacgtcctcctggccaccatgcagagaag
actgagccatgtggtttctgcatatacaacaatgtagccgtggctgcgaaacatgccatt
ggagctcatggtttgagtcgagtactgatcgtggactgggatgtgcatcacggcaacggg
atacagcacatgtttgaagatgacccacaagtcctttatgtctcaatccaccgctatgat
aatggcaagttcttcccaggcagtcctgatgccaactacaacagggcaggcaccaagaaa
ggaaaaggatataatgttaatatcccctggaataagagtggtatgggtgacggagactac
atggcagccatggtagaagtaatcctaccaattgcgtatcagtttaaccccgagctggta
ttggtatctgccggttttgatgcagctgttggagaccctttaggaggctgcaaagtttcc
cctgaatgctacggccacatgacaaaattattgtcatgccttgctggcggtcgagttatt
gttgctctagaaggcggttacaacttgaacacaatcagctactgtatgaccatgtgtgca
aaggctcttttaggggaccctctcatccctctcagtcagggccttgcagcatgttcaagt
gcctgtgagactttgaacaatgtcgtgtctgtacatcagaagttctggtcagcattagac
ttgcagagcaaaggaatggcatccagtaatcagaaatctaaaaagatcacaaagccgtct
ccgtctgttgatcttactgatagaagtccagagatcccagatagaaaaactggtcttgat
gaattaacaagcaccctcagccaaatgagtctgggcaaagaaagggaaggagccaagtct
acggaagttgttgaggtaaaaatggaggaggaggatggagccgtaggaggcgcttgtgcc
acacaagcggaaggcctgaatacgtttttactaacggaagtttcaggagcagagtctatg
tatgcagttgttcctttgcaatggtgtccacacttagaatcagtgcagcctgtgccaaag
agtagcttggatgccttcagtccatgtgaagagtgcaaagacttgtcagagaattgggtg
tgtctcacctgctacaaggttttgtgtggacgatttgtaaatgagcatatgctgatgcat
ggtgtaatggaagaacattacatggtgctaagttacgctgacttgtctgtttggtgctat
tcatgcgactcctatatccatcatgagatcctgcaggaagcaaaacgggcagctcacatt
agcaaattcggagaggatatcccaggctcattgtga
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