Penaeus vannamei (Pacific white shrimp): 113801635
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Entry
113801635 CDS
T06111
Name
(RefSeq) gem-associated protein 5 isoform X1
KO
K13133
gem associated protein 5
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113801635
03041 Spliceosome [BR:
pvm03041
]
113801635
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113801635
mRNA cycle factors
P-body specific factors
113801635
Spliceosome [BR:
pvm03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
113801635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_GEMI5
Beta-prop_RIG_2nd
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40
ANAPC4_WD40
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_Aladin
Beta-prop_WDR3_2nd
Beta-prop_EML
Beta-prop_RIG_1st
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_WDR19_1st
EIF3I
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
Beta-prop_EIPR1
WD40_Gbeta
Beta-prop_TEP1_C
Beta-prop_WDR41
Beta-prop_WDR75_1st
Beta-prop_SPT8
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
113801635
NCBI-ProteinID:
XP_069978394
LinkDB
All DBs
Position
1:36397993..36429988
Genome browser
AA seq
1488 aa
AA seq
DB search
MEEDNDFHSRFWDRNEFLSFGPLPCRFPEYDYDIEHEAGEILLPPSPNWFLCNAVDSRSE
DGLLVTASFKSIVIYKVTQEKALPKVIKLIPHGSEKVLLVKLHPNPLEAKYGHTLAVVGD
TYTVTLYNMHSGEVISQHKEHEKPVNGIAWGSVGGEEVVVTVGSGGRMVIWQARDSVTRI
HSFPYMNELSLVEVNPKDPSQALVAVLKTVLLVSLKDGKILTQLKGHEYEIYCVKWYLGS
GSPLEPDLAENNSRAEALCDSRTKEKVSSEDSPDRGSGSKNWRENTVSSNETGPFFASSD
YGRNILLWDVSAKRYIVRANVPHSASGFKKQSKDKVHGKQHISLGWYDGNLYSSTIRGEL
LSWSLWPGGAKFKSLHHLHNRAIYNLVLVGDIAVTSGQDRFLQGFHLKKSSHMFQVPTLG
ASATTLSFCPQDVNRLAIGSLDNNIRLLNFGSPIPLQTQTIFHNINGKVLSFSWHPVHEG
RLLFGTATGQVGWTDVASGRVTTFAYHHQKSVYKVEWGLPVCPEKTGSSEDWYAYSFGDR
EIVMRSSSDPMADPVCLQKLVAESEVNALPKDVTEFSFSPDYKYLALGSQDGQVRVYQRA
DLTLVVTLAVVRKTIQHLLWHPPMQSHYSDILAVASSEKEIYIFDMEKYLQDDKIGSVVT
QATRDLQGHESRVVWLAWSPHEEGILASASYDHTVQLWDTKTGEPKVNYGGHLNRVFRVE
FSPSDPDLMYSFADENSVHVWHPSEQTAKTPAERSTNLRDIRTKKPKDKETEAEEEAQSK
AVESSLSAEKKNGGGSVTSGTKSSSISAAASKKGHFKSFFPKFHTVCSKKKSFHHLLLLN
LLNQTKTAGTGNGHLEEEQVEDLEDLEEELEEEKNSEELEKQVSLPGIRSLCEKYSCLLE
KDTEMPEPEDIEYALSLYGNPEQIDTLLAAEIDAHEKKENATQAGLIHCWQGSLADHIRQ
AAKQRKLSEFLVASAPQVSMKLWQFACESYAEQLIDEGDIITGASYLINILKVEEAINIL
LKHHYYREALAIAKSRLGCNEEVMNKVVTAWAASSIYEGSFDVAALLQLSIGQVESAARA
MARKSDAGSLFVAAKLYAGAEKDDLAKAMGLLALKEASLKHEHGKIESFLQHLPGFDWYR
AISCCHNVYLQILQQVSLEMEKGERYLIGDTAENREGITNTYGDEKKADSTAVFVPSFLR
PPLERVKEDWSNLGITQEQYGDLYETVTVNFSMQQTPTNVKQLWYLVTVATCKMLTSPNK
EAWEQHLKTALGYALSWGKVDQLFHLTHALLPRGTSDLTTLGSHYLEVEEAVSLLCYLYN
YSEVSLLHSFLESDEASSILKIQNSSTDEPKEGIEKEANNVPITDDVAESLENRDVGTLE
AQLGTLSLAKDADGPRKTSEVNPKNRFYVPPQSCKELIVRVNHYLDHLEKDYKTLHNLDR
LSTKVAYDSEKCLGEIILKLREIGKVEEGDLEALSVRLSEVARDNSSK
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggataatgacttccatagcagattttgggacaggaatgaatttttgagtttt
gggcctcttccgtgccgtttccctgagtatgattacgacatagaacacgaggctggtgag
attctgcttcctccgtccccaaattggttcctatgcaatgctgtggattcccgttcagaa
gatgggctcttggtcacagcttctttcaaatcgattgttatctacaaagttacgcaggaa
aaagctttgccaaaagtaattaaattgatccctcatggcagtgaaaaggtgttgttagta
aaattgcatcccaatccattggaggcaaagtatggacacactttagctgttgttggtgat
acttacactgtcacactgtataacatgcacagtggggaagtaatttctcagcataaagaa
catgagaaacctgtgaatggcattgcctggggcagtgtaggaggagaagaagttgttgta
actgttggatctggagggaggatggttatatggcaagccagagatagtgtcactcgaatt
cattcttttccatacatgaatgagttatctttggtggaagtcaacccaaaggacccttcc
caggctcttgtggcagtgctgaaaactgttctattggtctctctgaaagatggtaagata
ctgacacaactgaagggtcatgaatatgaaatctactgtgtgaaatggtacctaggcagt
gggagccccttagaaccagacctcgcagaaaataacagcagagctgaagccttgtgtgat
agcaggacaaaagagaaagtttcttcagaagatagtccagacaggggttcaggatcaaag
aactggagagagaacacagtgtcttcaaatgaaacgggtccattctttgcatcatctgat
tatggtcgcaatattcttttatgggacgtgtcagccaaacgctatatagtcagagctaat
gtacctcattcagcatcaggctttaaaaaacagagcaaagacaaagtccatgggaagcag
cacatctcattaggatggtatgatgggaacctctactcatccacaatcagaggagagctg
ctcagctggtcactgtggccaggtggagcaaagttcaagtcactacatcatcttcacaac
cgggcaatatacaaccttgtgcttgttggtgacatagctgtgacaagtggacaggaccga
tttctgcaaggatttcatttgaagaagtcaagccacatgttccaagtccctactctgggt
gcctctgctaccactctctcattctgcccacaagatgtgaacagattggcaattgggagt
ttggataataacattagactgctgaactttgggagtccaataccactgcagactcagacg
attttccataacattaatggaaaagttctgtcattctcctggcacccagtgcatgaaggt
cggctcctgtttggcactgcgacagggcaggtgggttggactgatgtagcatcagggcga
gtaaccacctttgcttatcaccatcagaagtcagtgtataaggttgaatggggcctacca
gtttgtcctgagaaaacaggatcatctgaggattggtatgcatactcgtttggtgacaga
gagattgtgatgcgatcctcatcagaccccatggcagatcctgtttgccttcaaaaactt
gtggcagagtcagaggtaaatgccttgccaaaagatgtgacagaattttccttcagtcct
gactacaagtaccttgcacttggttctcaggatgggcaggtgcgagtgtatcaaagggct
gacttaactttggtggtgactcttgctgtggtgaggaagactatccagcacttgctgtgg
catccaccaatgcaaagccattactctgatatcctagctgtggcatctagcgaaaaggag
atatatatatttgatatggagaaatatctacaggacgacaaaatcggcagtgttgttacc
caggctacacgtgaccttcagggacatgaatctcgtgttgtatggttagcttggtctcct
catgaagaaggaattcttgcttctgcatcatatgatcacactgttcagttgtgggatacc
aaaacaggggagcccaaagtgaactatggtggccatctcaaccgtgtcttcagagtggaa
ttcagcccttctgatcctgatctaatgtacagttttgctgatgaaaatagtgtgcatgtg
tggcatccatcagaacaaacagcgaagactccagcagagagaagtacaaatttgagggat
atccgaaccaagaaaccaaaggacaaggagaccgaggcagaagaagaggctcagagcaaa
gctgttgaatcatcactgtctgcagagaagaagaatgggggaggcagtgtcacaagtggg
acaaaatcctcaagtatcagtgcagcagcaagtaaaaaaggacattttaagtcattcttc
ccaaagttccatactgtctgctcgaagaagaagagtttccaccacttactcttattaaac
ttgctgaatcagaccaaaactgctggaactgggaatgggcatcttgaagaggagcaagtg
gaagatctggaggatttggaagaggaactggaggaagagaagaattcagaagagttggaa
aagcaagtgagtttgccaggcatcagatccttgtgtgaaaagtattcttgcttgctggag
aaagatactgagatgcctgaaccagaagacatagaatatgccctaagtctgtatggaaat
cctgaacagattgatacactcctagcagctgaaattgatgcccatgagaagaaggagaat
gcaacccaagctggactgatccactgttggcaaggctccttggcagatcacatacgccag
gctgccaaacagaggaaactcagcgagtttctggtggcatctgcaccacaggtctccatg
aaattatggcagtttgcttgtgaatcatatgcagaacagttaatcgatgaaggtgacatc
ataacaggtgcttcatatcttattaatatcctcaaggttgaagaagcaatcaacatatta
ctcaagcatcattattatcgagaagctcttgcaattgcaaagagtcgcttgggttgcaat
gaagaagtaatgaacaaagtagtgacagcttgggctgcttcatccatatatgaaggaagc
tttgatgttgctgcattgctccaactgagtattggccaggtagaatcagcagcccgggca
atggctcggaagagtgatgcaggttctctctttgtggcggctaaattatatgcaggtgca
gagaaggacgatcttgctaaagctatgggcctcttggcactcaaagaagcctctctcaag
catgagcatggaaagattgagtcattcctgcaacatcttcctgggtttgattggtataga
gcaatttcatgttgccataatgtctacttgcaaatactgcaacaagtcagtttggaaatg
gaaaagggcgagaggtacttgataggagatactgctgaaaatagggaaggtataaccaat
acatatggagatgagaagaaagcagattccacagcagtttttgtcccgtcatttctccgc
ccccctcttgagagagtcaaggaagactggagcaacttagggattacccaagagcagtat
ggagacttatatgagactgtcactgtcaatttctcgatgcagcaaactcctacaaatgtg
aaacagctgtggtacctggtgactgtagcaacatgcaaaatgcttacaagtccaaacaaa
gaagcttgggagcagcacctgaaaactgctcttggctatgctctttcttgggggaaggtt
gaccagctcttccatcttacacatgctctacttccaagaggaacttcagacttgacaact
ttaggcagtcactacttggaagtagaagaggctgtcagtctgctgtgctacctgtacaac
tactcggaagtttctcttctgcactctttccttgagtcagatgaagcctcaagtatcttg
aaaattcagaattccagtacagatgaacctaaagaaggaattgagaaagaagctaacaat
gtcccgattacagatgatgttgcagagtctcttgaaaatagagatgttggtactttagaa
gcacagttgggcaccctaagtttagccaaagatgctgatggtccaagaaagacatcagaa
gttaatcctaagaatagattttatgtcccaccacagtcttgcaaagaactgattgttaga
gtgaatcactatttggatcatttggagaaagactataaaacattgcacaacctggataga
ctaagcacaaaagtggcatatgattcagaaaaatgtctgggggagataatactcaagctg
agagaaataggaaaagttgaagaaggagacctggaagcattaagtgtgcggttatcagaa
gtagctagagataactcatcaaaatga
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