Penaeus vannamei (Pacific white shrimp): 113802160
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Entry
113802160 CDS
T06111
Symbol
SMC1
Name
(RefSeq) structural maintenance of chromosomes protein 1A isoform X1
KO
K06636
structural maintenance of chromosome 1
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvm03036
]
113802160 (SMC1)
Chromosome and associated proteins [BR:
pvm03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
113802160 (SMC1)
Meiosis-specific proteins
Cohesin complex and associated proteins
113802160 (SMC1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_15
AAA_21
AAA_29
PUMA_CC
DUF2730
Laminin_II
ABC_tran
Motif
Other DBs
NCBI-GeneID:
113802160
NCBI-ProteinID:
XP_027208482
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All DBs
Position
7:40425418..40441436
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AA seq
1251 aa
AA seq
DB search
MKAILKYIEVENFKSYRGFYHIGPLKPFTAVIGPNGSGKSNFMDAISFVMGEKTSSLRVK
RLSDLIHGASIGQPISRTAHVTAVFTLESGEEKRFTRLVQGSSSDHKINGNVVSSQTYLK
ELESLGINVKGKNFLVFQGAVESIAMKNPKERTVLFEEISGSGALKEEYDRLKTEMLKAE
EDTQFTYQKKKGIAAERKEAKQEKEEAERYQRLKDELGEKQVEMQLFRLYHNEKEIAEFD
KEIKRKQADLEKVEKKKEKAEEILKEKKKEHTRVSREMSKMEQDIRELEAEVNKKRPTFI
KAKERVTHMQKKADSARKSLAQAIKAHNAHMDDIRELEGELQEVEKKRGEFEEQVSQDSE
NQGKSVQLEEVQIKEYHRLKNMAARKSAQYLQELDSINREQKSDQDRLDNAQRRTSEIES
RLRQKGHELEEAQKRVEKLMEHIRQSETSLEDQKRLRQELVSDVGYSKERITQLQEQLEN
VTEQLGDARVDKHEDGRRKKKQEIVENFKQLYSGVYDRMINMCQPIHKRYNVAITKVLGK
YMEAIVVDTEKTARQCVQYLKDQMLDPETFLPLDYIQAKPLKERLRNIKEPRNVKLLYDV
LQYDPPEIKRAVLFATNNALVCETPEDASKVAYDLEDGHRYDAVALDGTFFSKSGIISGG
SLDLARKAKRWDEKHLSNLKASKEKLSEELREAMKKSRKESELNTVESQIRGIETRLKYS
KTDKDSTEKQIAGLQKELDKLKAELNTFEPQLRDIEKVMSEREATMSDVKEKMNTVEDVV
FADFCKSIGVTNIRQYEERELQAQTDRANRRLEFEKQKNRILNQLEFEKSRDTQSNVARW
ERSVQDDEDALEQAKQAEQKQMGEIDKSMRDLEKKRSEKLAKKSECDEMDDEIGKARREV
GTIAKDIQSVQKQINSIDHKMEQKKGERHSILKQCKMDDILVPMTRGNMEDIENEGREAG
ESTLEYSSGLNTQVMYEKESRIVLDYTSLSETHKELDDIDDVHKAEKRMQKHINDLMNTI
QRIQAPNMKAMQKLDLAREKLQETNEEFDSARKRAKKAKQAFERVKKERYDKFMAFFEHV
SNEIDGIYKALAKNASAQAFLGPENPEEPYLDGINYNCVAPGKRFQPMSNLSGGEKTIAA
LALLFGIHSYQPAPFFVLDEIDAALDNTNIGKVASYIVDMKSHLQTIVISLKEEFYQNAD
ALVGICPDPGECLISKVLTLDLERYPLQRSEEPDPFGVKVCDLLYAHRKLP
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atgaaggccattttgaagtacattgaggtggagaacttcaagtcctaccgaggcttctat
cacatcggtccgctaaagccttttacggcggtcatcggccccaatggctccggcaaatcc
aacttcatggatgccatctctttcgtcatgggagagaagacatccagcctgcgtgtgaag
cgtctgagtgacctcatccatggcgcctcaattggacagcctatatcaaggacagctcac
gtgacagccgtgttcacgcttgaaagcggagaggagaagaggttcactcgtctggtacaa
ggctcgtcatcagaccataagatcaatggaaatgtggtcagcagccagacctatctcaag
gaattggaatctctaggcatcaatgtgaagggcaagaacttccttgtcttccagggtgct
gtggaatccattgcaatgaagaaccctaaggaaagaacagtgctgtttgaagagattagt
ggatctggagcattgaaagaggagtatgaccggctcaagacagagatgttgaaggcagaa
gaggatacacagtttacttaccagaaaaagaagggcattgcagccgaacgtaaagaggcc
aaacaagaaaaggaagaggcggagagataccagcgtctaaaggatgaactgggtgaaaaa
caagtagaaatgcagttgtttaggctgtatcacaatgaaaaggagattgcagaatttgat
aaagaaattaagagaaagcaagcagacctggagaaagtggagaagaagaaggagaaagct
gaggaaatcttgaaggaaaagaagaaggaacacacacgagtgtcgagggaaatgtccaag
atggagcaggatattagagaattggaagcagaggtcaacaagaagcgtccaaccttcatc
aaggccaaggagagagtaactcacatgcagaagaaagccgattctgctcgcaaatctctc
gcacaggccatcaaagcacacaacgcccatatggatgacatcagggagctggagggcgag
ctccaggaggtcgagaagaaaaggggcgagtttgaggaacaggtctcacaggattcagaa
aaccaaggaaagagtgttcagctggaggaggtgcaaatcaaagaataccacaggttgaag
aacatggctgctcggaaatctgcccaataccttcaagagcttgattcaatcaaccgcgaa
cagaagtcagaccaggacaggctagacaatgctcagagacgaacctcagagattgaaagt
cgcctcagacagaaaggtcacgagctggaggaggcacagaagcgtgtggagaagttaatg
gaacatatcagacaatctgaaacgtcattagaagaccagaagagattaagacaggagttg
gtatcagatgtaggttatagcaaggaacgcattactcagctacaagaacagctagagaat
gtgactgagcagcttggtgatgcacgtgttgacaaacatgaagatggacgcagaaagaag
aaacaggagatcgtggagaacttcaagcagctgtactctggggtgtatgacagaatgatt
aacatgtgtcagcccattcacaaaaggtacaatgttgccattacaaaagtcttgggtaaa
tacatggaggccattgttgtggacactgagaagacagcccgtcagtgtgtccagtacctc
aaagatcagatgttagatccagagaccttcctacccttggattatattcaggcaaagccc
ctcaaagagagattgagaaacatcaaagaacctagaaatgtgaagcttctgtacgatgtg
ttgcagtatgacccacctgagatcaagagggctgtgctttttgccacaaacaatgccctg
gtgtgtgagaccccagaggatgcctccaaagtggcctatgacctggaggatggtcacaga
tatgatgctgttgcacttgatggtaccttcttctccaagtctggtatcatttctggaggt
agtttggatcttgcccgtaaggccaagagatgggatgaaaagcacctctctaacctcaaa
gcctcaaaggagaagctgtctgaagagctccgggaagccatgaagaagtcaaggaaagag
tcagagcttaacacagttgagtcacagattcgtggtattgagacaaggctcaaatattct
aagacagacaaagactcaacagagaagcagatagctgggctgcagaaggagctagacaag
cttaaagcagaacttaacacctttgagccccagctacgggatattgagaaggtcatgagt
gagcgggaagccacaatgagtgacgtcaaagaaaagatgaacacagtggaagacgtggtc
tttgctgacttctgtaagtccattggagtcactaacatccgtcagtatgaggagcgagag
ttgcaggctcaaacagatagggcaaatcgccgcttagagtttgaaaagcagaagaacaga
atattgaatcagctagagtttgaaaagtcacgtgacactcagagcaatgtggctcggtgg
gaacggtcagtacaggatgatgaggatgctctagaacaggccaagcaagcagaacagaaa
cagatgggtgagatagacaagagcatgagagacctggagaagaaaagatcagagaaactg
gccaagaagtcggagtgcgacgaaatggacgatgaaattggcaaggcacggagggaagtg
ggcaccattgccaaagacatccagagtgtgcagaagcagatcaattcaatcgatcacaaa
atggaacaaaagaaaggggagagacattctatccttaaacaatgcaagatggatgacatc
ttggttccaatgactcgaggcaacatggaagacatagaaaatgagggccgggaagcaggg
gaatctacgctagagtactcttcaggcctcaacacacaggtgatgtacgagaaagagtct
agaattgtcttggactacacatccctaagcgaaacacacaaggaacttgatgacattgat
gatgtgcacaaggctgagaagcgcatgcagaagcatatcaacgacctcatgaacaccatt
cagagaattcaggcccccaatatgaaagcaatgcagaagcttgacttggcgagagagaaa
ctccaagaaacaaatgaggagtttgacagtgcacgcaaacgggcaaagaaagccaagcag
gcctttgaaagagtaaagaaggagcgttatgacaaattcatggcattctttgagcacgtc
tcgaatgagattgatggtatttataaggccttggccaagaatgcctctgctcaagccttc
cttggcccagagaatccagaggaaccctacttagacggcatcaactacaactgtgtggcg
cccggcaaacgtttccagcccatgtccaacttgtctggtggagagaagacaattgctgct
ctggctcttctctttggtatccatagttaccaacctgctccgttcttcgtgcttgatgag
attgatgcagccctggacaacaccaacattggcaaagttgcatcatacattgtggacatg
aagtcacatcttcagaccattgtcatctcgctgaaggaagagttctaccagaatgcggat
gctcttgttggaatttgtccagatccgggcgagtgtctgatcagcaaagtactgaccttg
gacctagaaagataccccttgcaaagaagtgaggagccagatccttttggtgtcaaggta
tgtgacttgctttacgcacaccgaaagctcccctga
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