Penaeus vannamei (Pacific white shrimp): 113802457
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Entry
113802457 CDS
T06111
Name
(RefSeq) transcription factor Sox-21
KO
K23581
transcription factor SOX4 (SOX group C)
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvm03000
]
113802457
Transcription factors [BR:
pvm03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
113802457
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
113802457
NCBI-ProteinID:
XP_027208852
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All DBs
Position
38:27823711..27832099
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AA seq
412 aa
AA seq
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MLPGLCSDESHPMSSGHYVFGSMLVNDSSSTPYSDATQTKKHPPNHVKRPMNAFMVWSQL
ERRRIVSQTPDMHNAEISKQLGRRWKLLTEEQRRPYRDEAQRLKVLHRLEYPDYKYRPRK
KNAKGCAPPLASLPGGAGDVLRGVALGGGGRVSKGRSPLVGGTHSPPANAATVIKMRECL
RAANLKHLASKAAVPPSAAPQQQKPQPMSPSARLPTSPSHDLPDSPEGAATFKNRALRST
DHAVKEERRGDPMYCSGGAPEAGFGWPSDLLLASSPSAPPVEAAPLAEDPPTLADLDNIG
VKDLVPLSPGLALDLHALGSDIELWPAHEAGRDPSAPRDLATPPTPYHSGLQDPWTQALW
EDDVESFVEELQIKYQPLQLEASPPTASQAGAASAWLRPALEVSYSLGDPSR
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgttacccggattgtgcagtgacgaatcgcaccccatgagtagtggtcattatgttttt
ggttcgatgttggtgaatgacagctcgtcgacgccgtactcggatgcgacgcagaccaag
aagcacccgcccaaccacgtgaagcgccccatgaacgccttcatggtgtggtcgcagctg
gagcgccgccgcatcgtgtcccagacgcccgacatgcacaacgccgagatctcgaagcag
ctggggcgccgctggaagcttctgacggaggagcagcggcgcccctaccgcgacgaggcg
cagcgcctgaaggtgctgcaccgcctcgagtacccggactacaagtaccgcccgaggaag
aagaacgcgaagggctgcgcgccgcccctggcgtccctgcccggaggcgccggggacgtc
cttcgaggcgtggctctcggcggcggcgggagggtgtccaagggccggtcgcccctcgtc
ggggggacgcactcgccgcccgccaacgccgccaccgtcatcaagatgcgcgagtgcctc
cgggcggcgaacctcaagcacctggccagcaaggccgccgtgcccccctcggccgccccg
cagcagcagaagccgcagccgatgtcgccgagcgcccgcctgcccacgagcccttcgcac
gacctccccgactcgcccgaaggagctgcgaccttcaagaaccgcgccctccgctccacc
gaccacgccgtgaaggaggagcggcgcggcgaccccatgtactgcagcggcggcgcgccc
gaggcaggcttcggctggcccagcgacctcctgttggcgtcctcgccctccgcgcccccg
gtggaagccgcgcccctcgccgaggacccgcccacgctcgccgacctggacaacatcggc
gtgaaggacctggtgccgctgtcgccgggcctggcgctcgacctgcacgcgctcggctcc
gacatcgagctctggccggcgcacgaggcggggcgggaccctagcgccccgagggacctg
gcgacgcccccgacgccctaccacagcggcctgcaggacccctggacgcaggcgctgtgg
gaggacgacgtcgagtccttcgtggaggaactgcagatcaagtaccagccgctgcagctc
gaggccagtccgcccacggcgagccaggcgggggcggcgtccgcgtggctccggcccgcc
ctcgaggtgtcctactcgctgggcgacccctcgagatga
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