Penaeus vannamei (Pacific white shrimp): 113803035
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Entry
113803035 CDS
T06111
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113803035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvm03021
]
113803035
03036 Chromosome and associated proteins [BR:
pvm03036
]
113803035
Transcription machinery [BR:
pvm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
113803035
Coactivators
SAGA/TFTC/STAGA complex
113803035
Chromosome and associated proteins [BR:
pvm03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
113803035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
ELP3_N
Peptidase_C41
Motif
Other DBs
NCBI-GeneID:
113803035
NCBI-ProteinID:
XP_027209544
LinkDB
All DBs
Position
2:complement(<2462296..2486525)
Genome browser
AA seq
907 aa
AA seq
DB search
MATSNSLDQVSSADVDHSAVTDIVGSLETPLTAPAKTASNQAVDVSAEVGVSVGVTGTVQ
AKTNGGKVGCRGVPAVSGGSAVLAGKVVAPAGVSVAAASPQVLQSAGVPAGVLKGDCGAG
AALQGGPRLPLNALNNGAAGVKPVYGVGPTPMTGGAQGTQVVVNGGVSGGAHAGSPQASL
QAQPALKGLTKVVTTAGAAGQPAVIMSKPGTVTAVPSTGTPGTVPIPQGMQILNMRPSQA
IKTTQGTTTLAPRMILSPAQVLPGMRPGQPGQITLGTLQGLPPGAQGHLLVKTENGQLQL
LRVNAAAAPPGQLPTSVTTTTTLQQAPTTAYRFQQPQAGTVAVRSVMVTSAAARPNTIIL
QSQASNTAAISTGTTTTTMATQAGTAVNPTTVPVTPGTTVAGTVVPSTPTTAAAPVTQTT
QPAAATGGSQTISAESAKTKCKNFLATLLKLANEQRATVARNVRNLIQGLIEGRVEPEVF
TEELQKDLNSSPQPCLVPFLKKTLPYLRVSLARGELTIDGVRPPPLSAVTPVTGVTTVIP
AMSVARPGAPTTSGTVRTIAPAAATATTVVHRPVNATSTPARVVGQQQVQQVRVQGGKTV
VTTVRQNTTAASSPASTTTNTVPTATKTITVNKTIPTKDKEKSNKNQLFTYSSSYSSSGV
ADDDINDVAAMGGVNLGEESQRILESTGFVGTQIRSCKDENFLLNTPLTQRIKQICSKYG
LEEAPKDVVALVSHATQERLKTIVEKLAVISEHRLDIIKSDSRYEVVQDVKGQLRFLEEL
DKLEKKRKEEQEREMLMRAAKSRSKSEDPETAKLKAKAKEMQRVEMEEMRQRDANRTALN
ALQGPKKKPKLDLSAMDDGATFSGTFSQKYMPLRPRIKRVNLRDLMFLMEQEKELCKSTL
LYRSYLK
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccagtaacagcctggaccaggtgtcgagtgcagacgtggaccacagtgctgtc
actgacattgttggatcacttgagacacctttgaccgcaccagcaaaaaccgcatcaaat
caagcagtagatgttagtgccgaggtgggcgtgagtgtgggcgtgactgggactgtgcaa
gctaaaacaaacggtggtaaagtagggtgtcgaggggtcccggcggtcagcggaggctca
gcagtgttagcaggcaaggttgtggctcctgctggcgtgagtgtcgctgctgcgtcgcca
caggtcctgcagagcgcgggggtcccggccggggttctgaaaggggactgtggtgctggc
gccgccctccagggtggtccccgcctccccctcaacgccctcaacaacggagctgcgggc
gtgaagccggtgtatggggtgggccccacgcccatgacaggtggcgcccagggcacgcag
gtggtggtgaacgggggtgtgtccgggggggcccacgcaggctccccgcaggccagcctg
caggcccagccagctctcaagggactgaccaaggtggtgaccacggctggagccgcgggg
cagcccgctgtcatcatgtccaagccaggcacagtgaccgctgtgccctcgaccggcacc
cccggcacagtgcccatcccccagggcatgcagatcctcaacatgcggccgagccaggcc
atcaagaccacgcagggcacgaccacgctcgctcccaggatgatcctcagccctgcgcag
gtcctcccagggatgcgtccaggacagcccgggcaaatcaccttaggcacactacaaggg
ttgcctcctggtgctcagggacacctgttagtcaaaactgaaaatggtcagctccagttg
ttacgtgtcaatgctgctgctgccccgccaggtcagctgcctaccagcgtcactacaact
accacacttcagcaggcccccacaacagcatacagattccaacaaccgcaggctggcacg
gtcgcggtgaggtccgtgatggtgacgtctgcagccgcacgccccaacaccatcatcctc
cagtcacaagccagtaatactgctgccatatccaccgggacaaccaccaccaccatggct
acacaagcaggtactgctgtgaaccccacaacagtacctgtcacccctggcacaacagtg
gcaggtacagtcgtaccctcaactcctaccacggctgcggctcccgtcacccagacaacc
cagcctgctgctgcaacaggaggctctcaaactatctcagccgaatccgcaaaaacaaaa
tgtaaaaactttctggcaacattactgaaattggcgaatgagcagcgggcgactgtggca
cgtaatgttcgaaatctgattcagggcctcattgagggacgagtggagcctgaagtcttc
actgaggagcttcagaaagacctcaattcctccccacagccttgccttgttcccttcctc
aagaaaactttgccgtacctgcgtgtatccctagcgcgtggagaattaaccattgatgga
gtgcggcctccaccattatccgcagtcactcctgttactggtgtcaccacagtcatacct
gcgatgtctgtcgcccggcctggagctcctacaacttctgggacggttcggactattgca
cctgctgctgcaacagccacaactgtagttcaccgaccagtcaatgcaacttccacacct
gccagagttgtggggcagcaacaggtacagcaagttcgtgttcaagggggcaaaactgtg
gtaacgactgtaaggcagaatacaactgctgccagcagtcctgccagcactactaccaac
acagtacccacagcaaccaaaactataaccgttaataagacaattcctaccaaagacaaa
gaaaaaagtaacaaaaaccagctcttcacctatagcagttcctattcttcaagtggggtg
gctgacgatgatatcaatgacgtggcagccatgggaggggtcaacctgggagaggagtcg
cagcgaattctggaatctactggatttgtggggacacaaatcaggtcgtgtaaagacgaa
aatttccttcttaacactccactgactcagagaataaaacaaatatgttcaaaatatggt
ttggaagaggctccaaaagatgtcgttgccttggtgtctcatgccacacaagagagactg
aaaactattgttgaaaaattagctgtcatttcggaacacaggctagatataattaagagt
gacagtagatatgaagtggtgcaagatgtaaaaggtcagcttcgtttcctagaagagttg
gataagttggagaagaagcgcaaagaggaacaggagagagagatgctaatgcgagcggca
aagtcgcggagtaaatcagaggatccagagaccgcaaagctgaaggccaaagcaaaggag
atgcaacgtgtagaaatggaggaaatgagacagcgagatgccaatcggactgctctcaat
gcacttcagggccccaagaagaaaccaaagttggacttgtcggcaatggatgacggtgca
actttcagtggaactttctcccaaaaatatatgccactacgaccacggatcaaaagggtg
aatttgcgtgatctcatgttccttatggagcaagaaaaggagttatgcaagtccacatta
ctgtatcggtcttacctcaagtag
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