Penaeus vannamei (Pacific white shrimp): 113803547
Help
Entry
113803547 CDS
T06111
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113803547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvm03400
]
113803547
DNA repair and recombination proteins [BR:
pvm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113803547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_III
MutS_I
PWWP
MutS_II
MutS_IV
CDC27
Motif
Other DBs
NCBI-GeneID:
113803547
NCBI-ProteinID:
XP_027210134
LinkDB
All DBs
Position
21:complement(17657208..17668989)
Genome browser
AA seq
917 aa
AA seq
DB search
MAKQATLFTFFSKSNTPNKPKREETTPNKVKLKGNDFKALDLVWAKLDGYPWWPGLVCDS
PSEKTFMRKGQIHVQFFDNPPTRGWVREAFLKPYCPPGENGIPTYKDPKWVRAVGEADGA
KELPVEDRNLLIVEMVPSDEEDEAMETDEDDSDKSKENVDANISGKKGTRKKSKGSDEEE
PKKKRRRIILHSESESEDDYKPENDVESEDGSASSGVDEDDVSEPETESEIDSPVKAPSN
KRKRPTPGGRSLNSSLASSPSVSKAPSSTPKISQGTKSKLSLFAAKETPTKAEDTTENYD
YMNYPWLKPEGIRDRDRRRPDHPDYNPRTLYVPEDFLNQQTPGLRQWWELKSRHYDTVLF
FKMGKFYELFHMDAMIGVQVLGLLMMKGEKAHSGFPEIAYGRYSATLIEKGYKVARIEQT
ETPDMMEKRCKNMGRPTKFDRVVKREVCQISTRGTRVYSVLDGEASESSTNYLLAISEKI
KTGAGEGREFGVAFIDTSIGTFHIGQFSDDRHDSRLSTLMAHYPPAQILYERGRLSQKTQ
KLVTMSVPTNLREALVPEKEFWTASKTLSFLADGTYFKDEEGGSLQWPKEIQEMLDKSDT
LGKSPSPEWELGLSALGALVWYLMDCRLEEQLLTRKRFEIYSPLDEAVSTRQGKKESVPA
FISGRHHMVLDGTTLRNLEVFENNNGGFEGTLIDRLDRCSTPFGKRLLRSWLCAPLCSPS
SINSRLDAIEDLRNNPEVLEEVTPQLKGLPDLERILSKIHSQGLKRSKNHPDSRAIFFED
EKYNKRKVEDFLAALNGFKATMQIMKTFKGITSSLQSDLLKKCVSSTKDGGKFPELKEAL
EFFENAFDHHEAKREGKIIPSKGVDKEFDEAAEQIQETKDSLSEYLKEQCKYFGAKVVYW
GNDKKRYQLEVPDHACK
NT seq
2752 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacaggcgacgctatttacattcttttcgaagtcaaatactccaaataagccc
aagcgcgaggagacaacgccgaacaaagtcaaattgaaggggaatgatttcaaggccttg
gacttggtatgggcaaagcttgatggctacccatggtggccaggccttgtgtgtgacagt
cccagtgaaaagaccttcatgcgcaagggccagattcatgtccaattttttgataatcca
cctactcgaggatgggtcagagaagcgtttttgaaaccctattgcccacctggagagaat
ggtattcctacctacaaggatcccaagtgggtcagagccgttggggaagcagatggtgcc
aaggaactccccgtggaggaccgcaaccttctgattgtggaaatggtgccgtctgatgag
gaggatgaggcaatggaaacagatgaggatgatagtgacaagagcaaggagaatgttgat
gccaatattagtggaaagaaaggaaccagaaagaagagcaagggatcagatgaagaagaa
ccaaaaaagaaaaggaggagaattattttacattctgaaagtgaatctgaagatgattat
aagccagaaaatgatgttgagagtgaagatggttcagccagctctggtgtggatgaagat
gatgtatcagaacctgagactgagtctgagattgattctcctgtaaaggcaccaagtaat
aaacgaaaacgacctacgcctggagggcgtagcctgaattcatctttggcttcatcacct
tcagtatccaaggcaccaagcagcacacccaaaatttctcagggaacaaaatcaaaattg
tcactctttgctgcaaaagagactccaactaaggcagaggatactacagaaaattatgat
tacatgaattatccatggctgaaaccagaaggtattagagatcgtgatagacgtcgaccg
gatcacccagactataatccaagaactctctatgtccctgaagatttcttaaaccagcaa
actccaggtctgaggcagtggtgggaactcaaatctcgtcattatgatacagtactgttc
ttcaagatgggtaaattttatgagctgtttcatatggatgctatgattggagtccaagta
cttggcttacttatgatgaagggcgaaaaggcacattcaggtttcccagaaattgcttat
ggacgatattcagccactttgattgagaaaggttacaaggttgcacgtattgaacaaaca
gaaaccccagatatgatggagaaaagatgcaaaaacatgggccgtccaacaaagtttgac
cgtgttgttaaacgtgaagtgtgccagattagtacaagaggaactcgagtttacagtgtc
ttggatggagaagcctcagaatcctcaacaaattatcttctggctatttcagagaagata
aaaactggggctggtgagggtcgtgagtttggtgtagccttcattgacaccagcattgga
accttccatattggccagttttcagatgaccgccatgattcacggttaagcaccctcatg
gctcactatccaccagcccagattctctatgaacgaggacgactttcacagaagacccaa
aaacttgttacaatgtcggtgcctaccaatctgcgagaggccctggtgcctgagaaagaa
ttttggacagctagcaaaacattaagtttcttagctgatggcacatatttcaaggatgag
gagggaggatctttgcagtggcctaaagagattcaggaaatgttagataagagtgatacc
ttaggaaaaagtccatctccagaatgggaacttgggttatctgccttaggtgctcttgtt
tggtacctgatggactgtcgcttagaggagcagttgctcactaggaaaaggtttgaaata
tacagtcccctagatgaagcagtatcaaccagacaaggaaagaaggagtcggttcctgcg
tttattagtgggaggcaccacatggtcctggatggcacaaccttgcggaacttggaagtg
tttgagaacaacaatggtggctttgaaggtaccctcattgacagacttgacagatgctcc
acaccatttggcaaaagattattacgcagctggttgtgtgctcctttgtgtagtccctct
agcataaatagtcgtcttgatgccattgaagatttgagaaataacccagaagttttagaa
gaagtaacaccacagttaaagggcttgcctgatctggagagaatcttatccaaaattcac
tctcaaggtctgaaacgtagcaagaatcatccagatagcagagcaattttctttgaagat
gaaaaatacaacaagagaaaggtggaagactttcttgctgctcttaatggatttaaagca
actatgcaaatcatgaagacttttaaagggattacaagctctttgcagtcagacctactg
aagaaatgtgtcagtagtacaaaagatggcggaaaattcccagagctcaaagaagctttg
gaattctttgaaaatgcatttgatcatcatgaagccaaacgggaaggaaagatcatccca
agcaaaggtgtagataaagaatttgatgaagcggcagaacaaatacaggaaactaaagat
agtttatcagaatacctcaaagagcagtgtaaatattttggtgcaaaggttgtttattgg
ggtaacgacaaaaagaggtaccagcttgaagtcccagatcatgcctgtaaga
DBGET
integrated database retrieval system
