Penaeus vannamei (Pacific white shrimp): 113804301
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Entry
113804301 CDS
T06111
Symbol
beta'COP
Name
(RefSeq) coatomer subunit beta' isoform X1
KO
K17302
coatomer subunit beta'
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvm04131
]
113804301 (beta'COP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvm04147
]
113804301 (beta'COP)
Membrane trafficking [BR:
pvm04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
113804301 (beta'COP)
Exosome [BR:
pvm04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
113804301 (beta'COP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_RIG_2nd
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_LRRK2
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
MetallophosC
WD40_2
Motif
Other DBs
NCBI-GeneID:
113804301
NCBI-ProteinID:
XP_069993987
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Position
23:complement(29565963..29585740)
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AA seq
1182 aa
AA seq
DB search
MPLRLDVKRKLTARSDRVKSVDLHPTEPWMLASLYNGNVHVWNIESQQLVKSFEVCDLPV
RAARFVARKNWVVTGSDDMQVRVYNYNTLERAHQFEAHSDYVRCIAVHPTQPFILTCSDD
MTIKLWNWDKKWSCQQVFEGHSHYVMQIVINPKDNNTFASASLDRTVKVWQLGSPQPNFT
LEGHQRGVNCVDYYHGGDKPYLISGADDSLVKIWDYQNKTCVQTLEGHSQNVSSVSFHPE
LPIILTGSEDCTVRVWHANTYRLENTLNYGLDRVWCISALKGSNNVCFGYDEGSVMVKLG
REEPAMSMDVSGKIVWARHSEIQQANLKAMGDAEIQDGERLPLAVKDLGACDIYPQTIAH
NPNGRFVVVCGDGEYIIYTAMALRNKAFGPALEFVWALDSSEYAIRESNFNVKLFKNFKE
KKSFKPDFGCEGIFGGYLLGCRSSSTGLAFYDWESQELVRRIEIQPRQVFWSENGDYVCI
ATDENYFILKYSTDAVTKARETKEGLTEDGIEDAFDLVGEVQEVVKTGKWVGDCFIYTNS
VNRLNYYVGGEIVTIAHLDRTLYLLGYIPKDNRLYLGDKELNVVSYELLVSVLEYQTAVM
RRDFNTADRVLPTIPPAHRTRVAHFLEKQGFKKQALAVSTDPEHRFDLALSLGELEVCHQ
LAVEAGSEHKWRLVADLAQQQGDLQTAQTCLLRAHDYPGLLLQATASGNAGLIKEVATEA
ESQGRNNVAFLSHFLTGNLKDCLELLIKTNRIPEAAFFARTYMPGEMSRVVGLWKTAAGE
KIGQSLADPAQYDNLFPGLKDAVKSQQYLQQTTKPIPAASAASVPGNHERNIIEEMRAAE
ASGAFVYIAPEGEEVEFVDAPQQPEKGIDSLNEEVLITPSAPVMPVSMPVADAPEPLVPT
PAAPPPAAVPTPELIDDDITKDVGQELREEVDAFSNPDEDDWGSSENITGDDNTIMASAT
EKVDICKDENELEQVEEEEGEEEVGVEKWGEEEEEEKENIVKLEEEKEERLEAAGSASSS
TVPSRKMFDWDEDEAEDWGFQQTPQNELGAFVDLTHEVPADGGNPDHVTGVSQLIDLDKP
EDLASPRLVLGMSPGRMSTHETTSQDLGPSATDFEWDASVSDNLLDSFVMQPQIRNPGVS
GRPPIDQAQLERELELDLENVRIEDNIDPNDVNLDEEELLAD
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgcgactggatgtaaagcggaaattaactgctcgatctgatcgtgttaaatca
gttgatcttcaccctactgaaccatggatgcttgcatctctttacaatggcaatgttcat
gtatggaatattgagagccagcagttggtaaagagctttgaagtatgtgatcttcctgta
agagcagcaaggtttgtggcccgcaaaaattgggttgtcacaggctcagatgacatgcaa
gttcgtgtttataattataatacattagagcgtgctcaccagtttgaagcccactcagat
tatgtgaggtgtattgctgtacacccaactcagccattcattcttacgtgcagtgatgat
atgacaatcaaactttggaactgggataagaaatggtcctgccaacaagttttcgaggga
cactcgcactatgtaatgcagattgtcatcaatccaaaggataacaacactttcgcttct
gcttctcttgatcgtactgtgaaggtatggcagcttggttctccacagccgaactttact
cttgagggtcatcagcgtggagtgaattgtgtggattactaccatggtggagacaagcca
tacttgatttcaggggctgatgatagtctggtcaagatttgggattatcaaaacaaaaca
tgtgtgcaaaccctggaaggacactcacaaaatgtttcctcagtatcattccacccggag
ctaccaatcatcctgactggctctgaggactgcactgtgagggtctggcatgctaacact
taccgtctggagaacacactcaactatggtcttgatagagtgtggtgtatatcagctctc
aagggctccaacaatgtctgctttggctatgatgaaggcagtgtcatggtcaagcttggt
cgtgaggagccagccatgtcaatggatgttagtggcaagattgtgtgggccagacattct
gaaattcagcaggccaatctgaaagctatgggtgatgctgaaattcaggatggagaaaga
ctacctttggctgtcaaggatcttggagcatgtgacatctatccacagactattgcacat
aaccccaatggaaggtttgtagttgtttgtggtgatggagaatacatcatttacactgcc
atggcattgcgtaacaaagcatttggtccagctctggagtttgtttgggctttggactcc
tcagagtatgccatccgtgaatctaacttcaatgtgaagctattcaaaaacttcaaggaa
aagaaatctttcaagccagacttcggttgtgaaggtatatttggtggatatctccttgga
tgcaggtcaagttcaacaggacttgccttctatgactgggagtctcaagagttggtgagg
cgcattgaaattcagccacggcaggttttctggtcagagaatggagattatgtgtgcatt
gccactgatgagaattacttcattctcaagtacagtactgatgccgtcactaaagccaga
gagaccaaggagggtcttactgaggatggcattgaagatgcttttgatcttgttggagag
gtgcaagaggttgtcaagactggcaagtgggttggagattgcttcatctacacaaattca
gtgaatagattgaactattatgtgggaggcgagattgttactattgctcatttggacagg
actttgtatcttctgggttacattcctaaggataaccgcctgtacttgggtgacaaagaa
ctgaatgtggtatcttacgagctgctagtgtctgtcttagagtatcagacagctgttatg
cgtcgtgactttaacactgctgaccgtgtgctccccacaatcccacctgcccatcgcact
cgagttgcccacttcttagagaagcaagggttcaagaagcaggccttggctgtttccaca
gatcctgaacacaggtttgatcttgccctgagtctgggtgaactagaagtgtgtcatcag
ctcgctgttgaagctggttctgagcacaagtggcggctggttgcagacttggcacaacag
cagggagacctccaaacagctcagacatgcctcctccgtgcccatgattaccctggattg
cttctacaggccacagcctctggtaatgctggattgatcaaggaagtggctactgaagca
gaaagccaaggtcgaaataatgtagccttcttatcccacttcctaacgggcaatttgaag
gactgtctggaactcctgatcaagaccaatcgaattccagaagcagcattcttcgcaaga
acttacatgccaggtgaaatgtcccgtgttgttggtctatggaaaaccgctgcaggagag
aagattggtcagagtttagctgaccctgcacaatatgacaatcttttccctgggcttaaa
gatgctgtaaaatctcagcagtatttacagcagacaacaaaaccaatcccagcagcatct
gcagcttctgtgcctggcaaccatgagcgcaatatcattgaggaaatgcgagctgcggaa
gcatctggagcctttgtctacattgcaccagaaggagaggaagtcgagtttgttgatgct
ccacagcaaccagagaaaggaatagatagcctgaatgaggaagtactaataactccatca
gcacctgtaatgcctgtatcaatgcctgtagctgatgctcctgagcctttagttccaaca
cctgctgcaccaccacctgcagctgtcccaaccccagaattgattgatgatgacatcaca
aaggatgttggtcaagagcttcgtgaagaagttgatgcattttctaacccggacgaagat
gactggggaagcagtgaaaatattactggggatgataataccataatggcctctgccaca
gaaaaggttgatatttgcaaagatgaaaatgaacttgagcaggtggaggaggaggagggg
gaggaggaggtaggtgtggagaagtggggggaggaggaggaggaggagaaggaaaatatc
gtaaaactggaagaggagaaggaagagagattggaagcagcaggatctgcatcctcttcc
actgtccccagcaggaagatgtttgactgggatgaagatgaagcagaagactggggattc
cagcagaccccccagaatgagctaggagcttttgtggacttgactcatgaggtaccagct
gatggtggcaatccagatcatgtgacaggagtctcacaattaatagacttagacaagcca
gaagatttagcatcacctagattggtcttaggaatgtctccaggtagaatgtcaacccat
gaaacaacatcccaagatttgggcccttctgcaactgattttgaatgggatgcatctgtg
tcagataacctcttagacagttttgtcatgcagccacagattagaaatccaggtgtgagt
gggaggccgccaatagaccaagcacaattggagagagagttagaattagaccttgaaaat
gttcgcattgaagacaacattgatcccaatgatgtgaacctggatgaagaagaattgttg
gcagactaa
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integrated database retrieval system
