Penaeus vannamei (Pacific white shrimp): 113804664
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Entry
113804664 CDS
T06111
Symbol
Brr2
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113804664 (Brr2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvm03041
]
113804664 (Brr2)
Enzymes [BR:
pvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113804664 (Brr2)
Spliceosome [BR:
pvm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113804664 (Brr2)
Complex C
U5 SnRNP specific factors
113804664 (Brr2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_25
HTH_61
AAA_19
PhoH
nSTAND3
DnaB_C
DEXQc_Suv3
SWI2_SNF2
TcA_RBD
DrmE_N
Motif
Other DBs
NCBI-GeneID:
113804664
NCBI-ProteinID:
XP_069975054
LinkDB
All DBs
Position
43:12967549..12985567
Genome browser
AA seq
2120 aa
AA seq
DB search
MADQTARQLQYEYKANSNLVLQADVRLIERRGKDEATGEVMSLTGKLEGTRMGDRYQRTR
PQQPKEEQRKSKKQKREDAPSIAVKNMTILELDDMADIFYRPKSTDTKQTYEVILSFIQE
ALGDQPRDVLCGAADEVLSVLKNDKLKDRERKKETEELLGSLAEERFAVLVNLGKKITDF
GHETKTVANEAVLDETHGVNVQFEDSEEEEEDDVAGEVRDDEEEEIDAEESAAGSHAIHA
ENLTGGDQVGAKKERVLSPHDIGAHWLQRELNRFYNDPIQAQTKSSDVLEILKTAKDDRE
CENKLVLNLGYDKFEFIKILNKNRQMVLYCTLLASAQSETEKEEIRRIMLAEPNLKRILA
LLENEEEAMDMNDNGEELGGSRPRRINTEAMEVDDRSGQVPGHREYVDLEALVFTTGSHY
NSNKKCHLPEGSTRQMKKGYDEIHVPALKPKPFAPDETLVPIANLPTYAQPAFDGFKNLN
RIQSKLFKAAMDSDENLLLCAPTGAGKTNVALLTILREVGKNTNPDGSINGDAFKIIYVA
PMRSLVTEMTQNFSKRLESYGLKVGELTGDHQLTREQIMETQVIVCTPEKWDVITRRGGE
RSYTQLVRLIIFDEIHLLHDERGPVLEALVARTLRNAETTGDIVRLVGLSATLPNYEDVA
AFLRVNLKTGLFFFDNSFRPVPLAQQYIGITEKKAIKRYQVMNDILYEKVMEHAGKNQIL
IFVHSRKETAKTAKAILDMCLEKDTLGNFLREGSASTEVLRTEAEQVKNNDLKGLLPYGF
AIHHAGMNRVDRNLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVIKGTQVYDASKGRWV
ELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLMNQQLPIESQLIAKLPDLLN
AEIVLGSVQSVRDAVNWLGYTYLYVRMVRAGNLYAVQSDTSDKYLQQHRANLIHSAALKL
EKGNLIKYDKKSGNFQVTELGRIASYFYITFDTMNVYNQQLKPTLSEIELFRVFSQSSEF
KNLMVREEEKLELKKLMERVPIPIKESVEEPSAKVNILLQAYISQLKLDGFALMSDMVYV
TQSAGRLMRAMFEIVLHRGWAQLADKTLNLCKMVDKRMWQSMSPLRQFRKIPEEAIRKLE
KKSIPWERLYDLGPNEIGELIRMPKGGKMIHKYIHQLPKLDLETHIQPITRQMLKVELTI
TPDFKWDEKVHGRSQAFWILVEDVDAENILHHEYFLLKQKFNEDEHVIKFFVPVFEPLHP
HYFIRITSDTWLAAETQLPVSFRHLILPEKYPPPTELLDLQPLPITALRNPQYEALYKTL
NRNQQFNPIQTQVFNATYNSDDSVFIAAPTGSGKTLCAEFAILRMFSQDETARCVYVASK
DEIVESMYDHWQEKFGNLDKRVVLLTGETGADLKLLNKANIVVSTAEKWDVLSRRWKQRK
NVQNISLFIVDELQLMGGSDGPTLEVVCSRIRYIASKISKHIRILALSSSLANARDVAQW
LGCSSNYTFNFHPNVRPLPLELHIQGFNNPHNASRIYAMAKPAYSAILKHSPRKPAMVFV
PSRKQSMITASDLLTFAAADKEPQRFLQVNPEEMTEFLPQISDEMLRELVSQGVGYLHEG
LSARDRRMVERLFEAEAIQVVVVSRALCWAVTAPAHLVVIMDTQSYNGRLHNYEDYPITD
TLQMVGRANRPNDDDEAKCVLMCHSSKKDYFKKFLYEPLPIESHLDHALHDHFNAEIVTR
TIENKQEAVDYVTWTFLYRRMTQNPNYYGLQGVSHRHLSDHLSDLVENTLHDLEESRCIT
IEDDMDTAPLNLGIIASYYYINYTTIELFNKSLNSKTKIRGLLEIISSAAEYENVPIRHG
EEDTLRRLIQKVPNKPEGKPTDPHTKTNLMLQAHLTRLTLSAELQQDTELVLGRALRLIQ
ACVDVLSSNGWLAPALSAMTLAQMVTQAMWSKDSYLKQLPHFTSDMIERCEAKDVTSVFD
ILELEDDDRNRLLQLSDAQMTDVARFCNRYPSINLDYEVVDSDSITSGAMVNVEVVLERE
DEPGPVIAPLFPHKREEGWWVIIGDPKANSLISIESPRPAEGSYEYRLYFMSDAYMGCDQ
EYKVPLRVREAESESDSDSD
NT seq
6363 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccaaacagcgcgtcagctccagtacgaatataaagcgaactcgaacctcgta
ttacaagcagatgtccggcttatcgagcggcgtggcaaagatgaggccaccggagaggtc
atgtccctcacggggaagctggagggcacgcgtatgggggaccggtaccagcgcacccgg
ccacagcaacccaaggaggaacagaggaagtcaaagaaacagaagcgcgaggatgcccct
agcattgccgtgaagaacatgaccattctggagctagacgacatggctgacatattctac
agaccaaagagcactgacacaaagcagacctatgaggtgatcctatcatttatccaggaa
gcccttggagaccagcccagggatgtcctttgtggtgcagccgatgaagttttgtcagtc
ctcaaaaatgataaactcaaagacagagaacgcaagaaggagacggaagagttgttggga
agtctggcagaggaaaggtttgcggtgctagtcaatttggggaagaaaatcacagatttt
ggccatgagacgaagacagtggcaaatgaggctgtgctagacgagactcatggtgtcaac
gtgcagtttgaagattctgaggaagaggaggaagatgatgtggcaggtgaagttcgagat
gatgaagaagaagaaattgatgcagaagagagtgctgcaggttctcatgccatccatgca
gagaacctcacaggaggtgaccaagttggagccaagaaggagagagtgctgagcccgcac
gacattggtgcacactggctgcagagggagctgaacagattttacaatgatccaatacag
gcgcagacaaagtcaagcgatgtgctcgaaattctcaaaacagccaaggatgacagagag
tgtgagaataaacttgtgctcaatctgggatatgataaatttgaatttattaagatctta
aacaagaatcgtcagatggtgttatactgcaccctccttgcctcagcccagtcagaaaca
gaaaaagaagagattcgcagaataatgttagcagagcctaacctgaaaagaatcctggct
ttgcttgaaaacgaggaggaggccatggacatgaacgacaatggagaggaattgggtggc
tcccgaccaagaagaatcaacacagaggcaatggaagtagatgacaggtcaggacaggtc
cctggtcatagagaatatgttgacctggaggctcttgtatttacaacaggttctcattac
aactccaacaagaagtgccaccttccagagggctcaacaaggcagatgaagaaagggtat
gatgagatccatgttcctgccctcaaacccaaaccctttgctccagatgaaaccttggtc
cctattgcaaacttgccaacttatgcccagcctgcttttgatggctttaagaacctcaac
agaatccagagcaagttgttcaaggcagccatggacagtgatgaaaatctactgctttgt
gctcccactggtgcaggtaaaaccaatgttgctctccttaccattttaagggaagtcggc
aagaacaccaacccagatggatccatcaatggggatgcattcaaaatcatatatgtggca
cccatgcgctcccttgtaacagagatgacccagaacttctctaagaggctggagtcttat
gggctgaaggtaggggagctgactggtgatcatcagttgacacgagagcaaattatggaa
acccaagtgattgtgtgtacgccagagaagtgggatgtcattacaagacgtggtggggag
aggtcatacactcagcttgtgagacttattatatttgatgaaatccatctcctccatgac
gaacgaggccctgtgctagaagctttggtggcacgtactttgagaaatgctgaaacaaca
ggggacattgttcgcttggttggattgtcagctacattgccaaattatgaagatgttgca
gcattcctgagagtcaatctaaagactgggctgttcttctttgacaacagtttccgacca
gtgccccttgcacagcagtacattggtattactgagaagaaggccatcaagagataccaa
gtcatgaatgatatcctgtatgagaaggtgatggagcatgctggaaagaatcagatcctt
atttttgttcactcaaggaaagagacagctaaaactgccaaagcaatcttggacatgtgt
ctggagaaagatactctcggtaatttcctgagagaaggatcagcatccacagaggtgttg
cgcacagaggctgaacaggtgaagaacaatgaccttaaaggattactgccctacggcttt
gctattcatcatgctggaatgaacagagtggatcgtaacttggtggaagatctgtttgct
gatcggcacattcaagtgttggtgtccactgccacacttgcctggggtgtgaaccttcca
gctcacactgtagtgattaaaggaacacaggtctatgatgcaagcaagggacgttgggta
gagttgggtgctttggatgtactgcagatgctgggacgtgcaggtcgaccccaatatgat
acaaagggtgaaggcatcctcatcaccaaccattcagagttgcaatattacctttcctta
atgaatcaacagttgcccatcgaatcccagttgatagcaaagttgccagaccttttaaat
gcagaaattgtcttaggatcagttcaaagtgttcgagatgctgtgaactggttgggttac
acctacttgtatgtgagaatggtccgtgcaggcaacttgtatgcagtgcagtctgacacc
tctgacaaatacttgcagcagcatcgagccaaccttatccattcagcagctctgaaacta
gaaaagggcaacctcatcaaatacgataaaaagagtgggaatttccaggtgacagagttg
ggacgcattgccagttacttttacatcacttttgacacaatgaatgtctacaaccagcag
ttgaagccaactttgagtgagattgagttgtttagggtcttctctcagagttctgagttc
aagaacctgatggtgagagaggaggaaaagctggagttgaagaagctgatggaacgtgta
ccgattccaatcaaggagagtgtggaagagcccagtgcaaaggtcaacatcctcttgcag
gcttatatttctcagctcaaacttgatggttttgcccttatgtcagatatggtgtatgtg
acacagagtgccggcaggctgatgagagccatgtttgagattgtgctccacaggggctgg
gcccagctggcagacaagaccctgaacctgtgcaagatggtggacaagaggatgtggcag
tccatgtcaccccttcgccagtttaggaagatcccagaggaggctatccgcaagctggag
aagaagagcattccctgggaacgtctctatgatttgggccccaacgagattggtgagctc
atccgcatgccaaaaggagggaagatgatccacaagtacattcatcagctaccaaagctg
gacctggagactcacatccagcctatcacccgccagatgcttaaggtggagctcaccatc
accccagacttcaagtgggatgagaaagtccatggacgctcccaggctttctggatcttg
gttgaggatgtggacgcagaaaacatcctccatcatgagtatttcctcctgaagcaaaag
ttcaatgaggatgagcatgtcatcaagttctttgtgcctgtgtttgagcctctccatccc
cattacttcattcgcatcacttctgacacctggcttgcagcagagactcagttgccagtg
tccttccgtcatttaatccttcctgagaaatatccacctcccactgagctgctcgacctt
cagcctctgcccatcactgctcttaggaacccacagtacgaggccctctacaaaaccctc
aacagaaaccagcagttcaatccaatccagacccaagtcttcaatgcaacctacaactca
gatgacagtgtattcattgctgctcctacaggttctggcaagactctgtgtgcagagttt
gctattttgaggatgttcagccaagatgagacagccagatgtgtgtatgtggcctccaag
gacgagattgtggagagcatgtatgaccactggcaggagaagtttgggaacctggacaag
agggtggtgctgctaaccggtgagactggtgcagatctcaagctcctcaacaaagctaac
attgtggtgagcactgcagagaaatgggatgtgctctctcgccgctggaaacagaggaaa
aatgtgcagaatattagtttgtttattgttgatgagctgcagttgatgggaggctctgat
ggccctacattggaagtggtttgttctaggatccgttacattgcctcaaagatcagcaaa
cacatcagaatacttgccctgagttcttccttggccaatgccagagatgtggcacagtgg
cttggatgttcttcaaactacacttttaatttccatcctaatgttcgaccattgcctcta
gaactgcacattcaaggattcaacaatccccacaatgcttcaagaatatatgccatggcc
aaacctgcttactcagctatcctaaagcacagtccaaggaagccagcaatggtgtttgtt
ccctcaagaaaacagagtatgatcacagcaagtgacctcctcacctttgcagcagcagac
aaggaaccacagagattcttgcaggtaaaccctgaggaaatgacagaattccttccacag
ataagtgatgaaatgttgagggaactggtgagccagggtgtaggatacttgcacgagggt
ctcagtgccagagaccgcaggatggttgagcggctctttgaggcagaagccatccaggtt
gtggttgtgagtcgtgcactgtgttgggctgtgacggcacctgctcacttggtggttatc
atggacacacagagctacaatggccgtcttcacaactatgaagattatcccatcacagac
actctgcagatggtaggtcgtgcaaataggcctaatgacgatgatgaggccaagtgtgtc
ctcatgtgtcattcctcaaagaaggactactttaagaagttcttgtatgagcctctgccc
attgagagtcatcttgaccatgccctccatgaccatttcaatgctgagattgtcacacgt
accattgaaaacaaacaggaggctgtggactatgtcacttggactttcttgtaccgacgc
atgacacagaaccccaattactatggactacagggtgtctctcatcgtcatctgtcagat
catctctcagacctggtggagaataccctccatgacctggaagagtcgaggtgcatcacc
attgaagatgacatggacacagctccccttaacttgggtatcattgcctcatattattac
atcaactacactacaattgaattgttcaacaagtcactcaacagtaagacgaagatcaga
ggtctgctggagatcatctccagtgctgcagagtatgaaaatgtacctattcgccatggg
gaggaagacaccctgcgacgtctcattcagaaggtgcccaacaagccggaagggaagccc
actgacccacacacaaagaccaaccttatgctgcaggctcatctcacccgcctcacactg
agtgccgaattgcagcaagacacagagctggttctgggacgtgccctcaggcttatccag
gcctgtgtagatgtgctctcatctaatggttggttggcacctgctctgtctgccatgaca
ctggcacagatggtgactcaggccatgtggtccaaggactcgtatctgaaacagctgcca
cacttcaccagtgacatgatcgagagatgtgaagcaaaggatgtcacttcagtctttgac
atcctcgaattagaagatgacgaccgaaaccgactacttcagctctcggacgctcaaatg
acggatgtggctcgcttctgcaaccgctacccgagcatcaacctggactacgaggtggta
gattcggactccatcacgagcggtgcaatggtgaacgtggaggtggtgcttgagcgtgag
gacgagccaggccctgtcatcgccccgctcttcccccacaagcgcgaggagggctggtgg
gtcatcatcggcgaccccaaggccaactcgctcatctccatcgaaagcccacgccctgca
gaaggcagctacgagtacaggctctacttcatgagtgacgcgtacatgggttgcgatcag
gagtacaaggtaccactcagagtgagggaggccgagtcggaatctgattctgacagtgat
taa
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