Penaeus vannamei (Pacific white shrimp): 113804694
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Entry
113804694 CDS
T06111
Symbol
Polr2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03020
RNA polymerase
pvm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113804694 (Polr2B)
09124 Replication and repair
03420 Nucleotide excision repair
113804694 (Polr2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvm03021
]
113804694 (Polr2B)
03400 DNA repair and recombination proteins [BR:
pvm03400
]
113804694 (Polr2B)
Enzymes [BR:
pvm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113804694 (Polr2B)
Transcription machinery [BR:
pvm03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113804694 (Polr2B)
DNA repair and recombination proteins [BR:
pvm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113804694 (Polr2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
113804694
NCBI-ProteinID:
XP_069992783
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All DBs
Position
22:complement(19394266..19411402)
Genome browser
AA seq
1180 aa
AA seq
DB search
MMSYADMDDDMNYGEEDGDEISPDIWQEACWLVISSYFDEKGLVRQQLDSFDEFITMTIQ
RIVEDSQAIDLQAEAQHTAGELETPPRHLLKFEQIYLSKPTNWEKDGFNYSMMPNEARLR
NLTYSSPLYVDIVKTVIKDGEKPIEHKEEKIYIGKIPIMLRSTYCLLSGLTDRDLHEVNE
CPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKCEIRSCIEHSARPVSTLW
VNMMARGGSSAKKSAIGQRIIGVLPYVKQEIPIMIVFRALGFVADRDILEHIIYDFDDPE
MMEMVKPSLDEAFVIQEQNVALNFIGGRGARPGVTKEKRIKYAREILQKEMLPHVGVSDF
CETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMALLFRGLFKSLMKEVR
MHAQKLLDKGQEYGLDAAVKPKLITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFA
STLSHLRRVNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGAAVGLVKNLALMSYISVGS
QPAPILEFLEEWSMENLEEIAPSSIYDATKIFVNGCWVGIHRDPEQLIMTLRKLRRQMDI
IVSEVCMVRDIRDKEIRIYTDAGRICRPLLVVENGKLLLKKRHIDLLKEREYNNFSWQDL
VASGVVEYIDCSEEETIMIAMSLEDFGVEEEKTYCNTYTHCEIHPAMILGVCASIIPFPD
HNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLFYPQKPLVTTRSMEYLRFRELPAG
INSIVGIACYTGYNQEDSVIMNLSTVERGFFRSCFYRSYKDSETRRTGMQEEIFEKPSRE
TCQGMRHAIYDKLDDDGIISPGMRVSGDDVIIGKTITLPENEDELEGQTRRFSKRDSSVF
LRGSETGIVDQVMLTVNVDGDRFTKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRIEDMP
FTVEGITPDIIINPHAIPSRMTIGHLIEALQGKLGANKGEIGDATPFNDAVNVQKISNLL
QEYGYHLRGNEVMHCGHTGRKMNAQIFLTPTYYQRLKHMVDDKIHSRARGPVQILVRQPM
EGRAREGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYAVHVCNLCGLMCIANLRNNTF
ECKGCRNKTQISQVRLPYACKLLFQELMAMNIAPRMMVLK
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcctacgccgatatggacgatgacatgaactatggggaggaagatggagatgag
atctccccagatatctggcaggaggcctgttggcttgtaatctcatcatattttgacgag
aaaggtcttgtacgacagcagctggactcctttgatgaatttattaccatgaccatccag
aggattgttgaggattcacaggcaattgatctccaagctgaagcccagcacacagcagga
gaacttgagactccacctcgtcatctgttgaagtttgagcagatttaccttagtaagcca
accaattgggagaaagatggtttcaactacagcatgatgcctaatgaagcacgactgagg
aatctgacctactcatcaccactctatgttgatattgttaaaactgttattaaagatgga
gaaaaaccaattgaacacaaagaagaaaaaatttatataggcaagattccaatcatgttg
aggtcaacgtattgcttgcttagcggtctgacagatcgtgatctccatgaagtaaacgag
tgtccccttgatcctggtggttactttatcatcaacggctctgaaaaagtattgattgct
caagaaaagatggccacaaatactgtgtatgtattcagcatgaaggacggcaagtttgct
tacaagtgtgaaattcgttcttgtattgaacattctgccagacctgtctctacactgtgg
gttaacatgatggccaggggtggaagtagtgcaaagaagtcggccattggtcagcgtatt
attggtgtcctcccatatgtcaagcaagaaatccccatcatgattgtgtttcgtgctttg
ggttttgtggctgatcgtgatattcttgaacatattatctatgactttgatgacccggaa
atgatggagatggtaaaaccatccttagatgaagcttttgtaattcaggagcaaaatgtt
gctctcaacttcattggtggccgtggagctcgcccaggtgtgacaaaagaaaagcgtata
aagtacgctcgtgaaattttgcagaaggaaatgttacctcatgttggtgtgtcagatttc
tgtgaaaccaagaaagcatatttcttgggttacatggttcacaggctgctgttggctgct
cttggtcgtcgagaattggatgatcgtgatcactatggaaacaagaggttggacttggct
ggaccgctcatggcactgcttttcagaggactattcaagagtttgatgaaagaagttcgc
atgcatgcacaaaaactcttggacaaaggccaggaatatggtctggatgctgctgttaaa
ccaaagttgatcactgatggtttgcgatattcccttgcaactggtaattggggtgaccag
aagaaagctcatcaggctagggctggtgtatctcaggtgttgaaccgattgacttttgcc
tctaccttgtcacatttacgacgtgtcaactctcctattggacgagacggtaaactggcc
aagccacgtcagcttcacaactctctttggggcatgatctgtcctgccgagacaccagag
ggagcagctgtcggtcttgtcaagaacttggctctcatgtcatacatttctgtcggatca
cagcctgcaccaattcttgagttcttggaggaatggtccatggaaaatttggaagaaatt
gctccatcatctatttatgatgcaacaaagatttttgtcaatggatgctgggttggtatt
catcgtgatccagagcagctcatcatgacactacgaaagctcagacgtcagatggatatt
attgtatctgaggtgtgcatggttagagatattcgtgacaaagaaatccgtatctacact
gatgctggtcgtatctgtcgtcctctgctagttgtagaaaatggtaaactgttgttgaag
aagagacacattgatttactgaaggagagggagtataacaacttcagttggcaggatctt
gtagccagtggtgtggtagagtacattgactgttctgaggaggagaccattatgattgct
atgtctcttgaggactttggtgtagaggaggagaagacctactgtaacacatacactcac
tgtgagattcatcctgctatgattctcggtgtgtgcgcttccattattcctttccctgat
cacaaccagtctcctcgtaacacttaccagagtgctatgggtaagcaagctatgggtgtc
tatattaccaacttccacgtgcggatggacaccctggcccacgtgctgttctaccctcag
aagccacttgtaactacccggtccatggaataccttcgtttcagagaactgcctgcagga
attaattccattgtaggaattgcctgctatactggttacaaccaagaagattctgttatt
atgaatctgtccactgtggaacgaggctttttcagatcctgtttctaccgttcctacaaa
gattctgaaactagacgcactggcatgcaagaagagatatttgagaaaccatcaagagaa
acgtgccagggcatgaggcatgctatctacgacaaattagatgatgatggaatcatttct
cctggaatgcgtgtgtctggtgatgatgttatcattggcaagaccatcactctccctgaa
aatgaagatgaactggaaggccagactagaagattttccaagagagattctagcgtgttc
ttgagaggctcagaaactggtatcgttgaccaagtgatgttaacagtaaatgtagatgga
gatcgtttcacaaagattcgtgtgcgatctgttagaattcctcagattggagacaagttt
gcttcacgtcatggacaaaagggtacttgcggtatccagtacagaatagaggacatgcca
ttcactgtggaaggtataaccccagacattatcattaaccctcatgccattccgtctcgt
atgacaattggccatttaattgaagctctccaaggtaaactgggagctaacaagggggaa
attggtgatgctactccgtttaacgatgccgtgaatgtacaaaagatctccaacctgctg
caggagtatggctatcacctgagaggcaatgaggtaatgcactgtggacacactggcaga
aagatgaatgcccagatcttcttgactcctacttattatcagcgtctgaagcatatggtg
gacgataagatccattcacgtgctagaggacctgtacagattctggtcaggcagcctatg
gaaggtcgtgcaagagagggtggcttgcgttttggtgagatggaacgtgattgtcagatt
gctcacggtgcagctcagttcttgcgagaacgtctgtttgaagttagtgatccatatgct
gtacacgtctgcaatctgtgtggtctcatgtgtattgctaatcttcgtaacaacaccttt
gaatgcaaagggtgtcgcaacaaaactcagatctctcaagttcggctaccatatgcctgt
aagctgctgttccaagaactaatggctatgaacatcgccccaaggatgatggtgctgaag
taa
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