Penaeus vannamei (Pacific white shrimp): 113805312
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Entry
113805312 CDS
T06111
Symbol
Pop2
Name
(RefSeq) CCR4-NOT transcription complex subunit 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113805312 (Pop2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113805312 (Pop2)
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113805312 (Pop2)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113805312 (Pop2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
113805312
NCBI-ProteinID:
XP_027212107
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Position
24:27866549..27886382
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AA seq
329 aa
AA seq
DB search
MVQSVMPSITGPFVLGGGSSGAGDRESGDGGGNRGGGRNSSVSRPMSNEECGIREVWAHN
MEEEFHHIRRIVHQYPYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGL
TFLDEQGKTPPGFSTWQFNFKFNLTEDMYAQDSIDLLQNSGLQFKKHEEDGIEPVDFAEL
LMTSGIVLFDNIKMLSFHSGYDFGYLLKLLTDQNLPCEESEFFELLRLYFPSIYDVKYLM
KSCKNLKGGLQEVAEQLELERVGPQHQAGSDSLLTGAAFFKMKEMFFEDKIDDAKYCGHL
YGLGTSFVVNGNSNTSYDNGHTSDSTSNS
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggttcaaagtgtaatgcctagtataacagggccgttcgtgctgggcggtggaagtagc
ggagccggagacagggagagcggcgatggaggaggcaaccgcggtggagggcggaatagc
agcgtgtcaaggccaatgtcgaacgaggagtgcggcattcgggaggtgtgggcacacaac
atggaggaggagtttcaccacatccgccgcattgtgcaccagtacccgtatgtggccatg
gacacagaattccctggcgtggtggctcggccaataggggaattcagaagtaatgcagac
taccaatatcagttattgcgatgtaatgtggacctcctgaagatcatccaactaggtcta
acattccttgacgaacaagggaaaacgccgccggggtttagcacttggcaattcaatttc
aagttcaatctcacggaggacatgtatgctcaagacagtatagacctgctacaaaattct
ggcctacagttcaaaaaacatgaggaagacggaatcgaacccgtcgactttgccgagctc
ctcatgacctcgggaattgtcctcttcgacaatatcaagatgctgtccttccacagtggg
tacgattttggctatctactgaagctcttgacagaccagaacctgccctgtgaagagagt
gaattctttgagcttttaagactctacttcccatcaatatacgatgttaagtacctgatg
aagtcctgtaaaaatctcaagggaggcctgcaggaggtggctgagcagttagagctggag
cgtgtggggccacagcatcaggcgggttcagattctcttctcacaggtgctgcgtttttc
aagatgaaagagatgttcttcgaggacaagattgacgatgcaaaatactgtggccacttg
tacggcttaggaacatcttttgttgttaatggaaactccaacacctcctatgacaatgga
cacacctcggactccacctcgaattcatag
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