Penaeus vannamei (Pacific white shrimp): 113805753
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Entry
113805753 CDS
T06111
Symbol
Sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113805753 (Sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvm03041
]
113805753 (Sf3b1)
03036 Chromosome and associated proteins [BR:
pvm03036
]
113805753 (Sf3b1)
Spliceosome [BR:
pvm03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
113805753 (Sf3b1)
Complex B
113805753 (Sf3b1)
Complex C
U2 SnRNP specific factors
113805753 (Sf3b1)
Chromosome and associated proteins [BR:
pvm03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
113805753 (Sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT
HEAT_EF3_N
HEAT_ECM29
HEAT_2
Htt_N-HEAT_1
XMAP215_CLASP_TOG
Adaptin_N
UME
DUF2298
Motif
Other DBs
NCBI-GeneID:
113805753
NCBI-ProteinID:
XP_027212614
LinkDB
All DBs
Position
10:36338983..36376878
Genome browser
AA seq
1322 aa
AA seq
DB search
MAARKFTTEDIEAHIQDIQNRKASLKPPPPLEGSAKDDERVRLDGGGYYDSDIYDISNGN
KYANYVQSIGVDDIDDDEDDGGTTLGKKGGGSTYTAPRLFLNEMVDKDHNPMAQYKRPTI
ADREDDYRAHRRLQVISPERNDPFADGGKTPDMNARTYAHIMQETRLKGEEALIRKTIQE
RTKEGTLQAVATNGDAPKAAPRKRGRWDQTADETPQPKKKTTWEAETPSVARWDETPGRA
KGSETPGATPGQSTRMWDATPGHATPGHETPVHDKATPSARRNRWDETPKTDRGETPGHN
SGWAETPRTDRGASDLIQETPTPSASKRRSRWDETPAAQTPGATPSGAMTPSTPHTPSMT
PGMMTPGGITPGGTTPVGPKAIGMATPSPGQLVNMTPEQIHAFRWEREIDERNRPMTDEE
LDALFPPGYEVLPPPQGYVPIRTPARKLTATPTPMIGTPQGFYMQKEGMTPKHDDSQPKG
NLPLLKPEDAQYFDKLLQDVDEESLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDK
AREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRVLYKLDDLVRPYVHKILVVIEPLL
IDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIP
SLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVR
TITALALAALAEAATPYGIESFDSVLKPLWRGIRQHRGKGLAAFLKAIGYLIPLMDGEYA
DYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEPGYIKEEILPHFFKHFWNHR
MALDRRNYRQLVDTTVEIANKVGASEIVNRIVDDLKDENEQYRKMVMETIEKIMANLGAA
DIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNALGSRVKAYLPQICGTILWRLNN
KSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKGIVN
VIGMHKMNPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSPREWMRICFEL
LELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAET
CSPFTVLPGLMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTSLLEDALMDRDL
VHRQTACAAIKHMAIGVYGFGCEDALIHLLNYVWPNIFETSPHLVQAFMDSIEGLRVALG
PQKILQYVLQGLFHPARKVRDVYWKIYNNLYIGAQDALVAGYPRILNTGNNIYSRDELDY
IL
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atggctgcccgtaaattcacaaccgaagatattgaagcacacattcaagacatccagaac
cggaaggctagcttaaagccccccccacctcttgaaggttcagccaaggatgatgagcga
gttaggctagatggtggtggctattatgacagcgatatttatgacatctctaatggaaac
aaatacgcaaattatgtccagtcaattggtgtggacgacattgatgatgatgaagacgat
ggaggaacaacccttggcaagaaaggagggggtagcacttacactgccccacgactcttc
cttaatgaaatggttgataaagatcacaaccctatggcacaatacaagcgacccacaata
gcagacagagaggatgattatcgtgcacatcgtcgattgcaagtcatttcccctgaaagg
aatgatccttttgctgatggaggcaaaacccctgacatgaatgcgcgaacctatgcacac
atcatgcaggaaacacgtctgaaaggagaagaggcccttatccggaaaacaattcaggaa
agaacgaaggaaggaactcttcaagctgtggcaaccaatggtgacgcaccaaaagctgct
ccaagaaaacgaggccgttgggatcagacagctgatgaaacgccacaaccaaagaaaaag
acaacatgggaagctgaaactccttctgttgctcgttgggatgagactccagggcgagct
aaaggaagtgagacacctggtgcaacgccagggcagagcactcgtatgtgggatgccaca
ccaggccatgcaacacctggtcatgaaacacctgttcatgacaaggctactccttcagct
cgacgaaatcgttgggatgagactccaaaaacagaccgtggagaaactcctggacataat
agtggctgggctgaaacccctcgaactgaccgtggagctagtgacctcatacaagaaacc
ccaactccaagtgccagcaagcggcgctctagatgggatgaaacaccagcagcacaaact
ccaggtgccactccatcaggagctatgaccccttcaacacctcatacacccagtatgact
ccaggaatgatgactcctgggggtataactcctggaggtacaacacctgttgggccaaag
gctattggcatggctactccatcaccaggacaactggtaaatatgacaccagaacaaatt
catgctttcaggtgggaaagggaaattgatgagaggaataggcccatgacagatgaggaa
cttgatgctctatttccccctgggtatgaggtgctaccaccacctcagggttatgttcct
atcagaacacccgcacgtaaattaacggctactccaacaccaatgattggaaccccacaa
gggttctacatgcagaaggaaggcatgacaccaaagcatgatgactcacagcccaaaggt
aatttgcccttactgaaacctgaagatgcccaatacttcgacaaacttttgcaagatgtt
gatgaggagagcctaagcccagaagagcaaaaggaaaggaaaataatgaagttgcttctt
aaaataaagaatggaactcctccaatgcgcaaggcagcactacgccagattacagataaa
gcaagagagtttggtgcagggcctctctttaaccagattcttcctttgctaatgtcccca
acactggaggatcaagaacgacatcttttggtaaaggttattgacagagttctctacaaa
cttgacgacctggtacgcccttatgttcataagattctcgtggtcattgaacctctactt
attgatgaagattactatgctcgtgtagaaggtagagagatcattagtaatttagccaaa
gctgctgggttagcaaccatgatttccacaatgagacctgatattgataacattgatgaa
tatgtgcgtaacactactgcccgagcctttgctgttgtggcctctgcccttgggattcca
tctttgttaccgtttttaaaggctgtatgtaagagcaagaagtcatggcaggcacggcat
actggtattaagattgtccagcagattgccatcttgatgggttgtgcaattttgccacat
ctccgttcccttgttgaaattattgaacatggactggttgacgagcaacagaaggtgaga
actatcactgctcttgccttggctgctctggcagaagcagcaacgccttacggtattgag
agctttgattcagtcttgaagcctttgtggcgtggtatccggcaacaccgaggaaagggt
cttgctgcctttttgaaggctattggttatctgatcccacttatggatggagagtatgct
gactactatacaagggaagtgatgttgatcctcattcgtgaattccaaagtcctgatgaa
gaaatgaagaagattgtgttgaaggtggtcaaacagtgttgtgctacagacggtgttgaa
ccgggatatattaaggaggaaatcctgccccactttttcaagcacttttggaatcacaga
atggctctcgatcgtcgaaattaccgccagctcgttgatacaactgttgagattgcaaat
aaagttggagcatctgaaattgttaaccgtattgtggacgatttaaaggatgaaaatgag
cagtaccgtaaaatggtaatggaaacaattgaaaagatcatggccaacctaggagcagca
gatattgattcacgactcgaagaacagttgattgatggcattctttatgcattccaggag
cagactacagaggacgtcgttatgctcaatggatttggtaccattgtcaatgctcttgga
tcacgcgtcaaggcttaccttcctcagatttgcggtactatattgtggcggctgaataat
aagtcggccaaagtgcgtcaacaagctgcagatcttatatctcgtattgcagtagtaatg
aagacatgtcaggaagagaagctgatgggacatttgggcgttgtgctttatgaatatctt
ggtgaggagtatcccgaagttcttgggtccattcttggtgctttgaaaggtattgtgaat
gttattggaatgcacaaaatgaaccctccaatcaaagaccttctcccacgtctcactccc
attctgaagaacagacatgaaaaagtacaagaaaattgcattgacttggtaggacgcatt
gccgacagaggaccagagtatgttagtcctcgtgaatggatgagaatttgctttgaattg
cttgaacttcttaaagcacacaaaaaagccatcagaagagcaacagtaaacacatttggt
tatattgccaaagctattggtccacacgatgtgcttgctacattactaaataaccttaag
gttcaagagcgacaaaatcgagtgtgcacaactgtggctattgctatagtcgccgaaaca
tgttccccatttacagttctcccaggtcttatgaatgaatacagagttcctgaacttaat
gtccaaaatggagttctgaagtccctttctttcctttttgaatacattggtgaaatgggg
aaagattatatctatgcagtgacatcacttctggaagatgctctcatggacagagatcta
gtgcatagacagactgcatgtgcagccatcaaacatatggccattggagtttatggcttt
gggtgcgaagatgcactgattcacttgttgaattatgtatggcctaatatctttgagaca
tcacctcatctggtccaagctttcatggacagcattgagggtcttagagtggcccttgga
ccacagaagatccttcagtatgttttgcaggggcttttccacccagcaagaaaagttcga
gatgtgtattggaaaatttacaacaatttgtatattggcgctcaagatgctcttgttgct
gggtatccacggatattaaatacaggcaacaacatatactccagggatgagcttgattat
atcttgtag
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integrated database retrieval system
