Penaeus vannamei (Pacific white shrimp): 113805976
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Entry
113805976 CDS
T06111
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36 isoform X2
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113805976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113805976
03012 Translation factors [BR:
pvm03012
]
113805976
Enzymes [BR:
pvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113805976
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113805976
Translation factors [BR:
pvm03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
113805976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
ATPase
AAA_16
AAA_19
NACHT
PhoH
ABC_tran
TsaE
AAA_23
Motif
Other DBs
NCBI-GeneID:
113805976
NCBI-ProteinID:
XP_027212865
LinkDB
All DBs
Position
16:complement(30057553..30081032)
Genome browser
AA seq
1055 aa
AA seq
DB search
MYGRREGRGGYRDGGGDGGGWRGESGGGWGGGRGRGRGGGGRGRGGGGGGRGRGERPPPH
LKGREIGLWYAQRSKDRQEKDVNLLPTLSMDASQVRNVGRMLDSLDERDYASKGTKRPEH
RAGASYQPEPDDDLSDEWDKRISSIVKKEFEDDDNSDVAGSSSGGAGDSFSNPDAWIQDN
TQKRQEQEKRQRSDAFAQRIDNMKESDFKQAYMANVHGNQMRDASGLSALKRDQMGLVRK
EAVDEKLYEDMMQQQNCPKYQKMLEARKKLPSYKMRDEIVDAVRDNQVVVISGETGCGKT
TQVAQFLLEDAVADGQGSTCSIVCTQPRRISAISVAQRVADERGENLGKSVGYQIRLEAT
HPRPEGSILFCTTGIVLQWLQSDPLLSKVSHLVLDEIHERDMLSDFIIAIAKDLIKVRSD
LKVILMSATLNAELFSEYFGGCPMLHIPGFTFPVKEFYLEDVIEMTRFKFEDEREVPIWV
RKSNKHKDNEFEGMIAPYVRNLERSGKYSCHTLDELYKSTSEKLNLDLVLELLRSINRKE
PGAVLVFLPGWADISKLHSLIQGDRSFSRSSHLVIPLHSLMPSVNQREVFNRPPPGVRKI
VLATNIAETSITIDDIVYVINAGRIKMKNYDKEANLVTLLPEWVTLANARQRRGRAGRVQ
EGVCYHLYSRAREQLLDDYPLPEIQRTRLEEIILHVKILRLGSAKPFLAKLMMPPDPNVV
DKSLEMLQAINALDESENLTPLGFHLARLPVDPLTGRMLLMAAIFSCVGPILTIASALSF
KDPFSVPLGKERIVDEIKKKMSRGTKSDHLMLVNVYDGWEDAWRHREAREYCWDNFLSSA
VLEQLRNMRRQFMGLLYEHKFVNSKDPQAAEANRNSDNIALVRAIITSGLYPNVARVLPQ
RGRPNPHKPRSIRTQYERRVSLHPKSVNEKEREYESPWLMYREKIKSSKVYIHDSSMVPN
YPLLFFGRKLNYVDGVINVDDFVRVRCSRHVAHLVQSLRTQLDELLEYKISHPGVTRWNK
SSKEGALLHTIVDLISSEKISSSQDNYDYYDDGDD
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgtatgggagacgtgaaggaagaggaggctaccgtgatggtggtggagatggtggcggt
tggagaggagaaagtggtggaggatggggaggaggtagaggaagaggaagaggcggagga
ggcagaggaaggggaggtggggggggcggaagaggccgaggggaacgacctccaccacat
ttaaagggcagagaaattggcttgtggtacgctcagcgctcaaaagatcgtcaagaaaaa
gatgtgaatcttttacccacattgtctatggatgccagtcaagtacgaaatgttggacga
atgcttgactcactggatgaaagagattatgctagcaaaggtacaaagagaccagagcac
agggctggtgcaagttaccagcctgagccagatgatgacctcagtgatgagtgggacaaa
cgtatatcatctattgtgaagaaggaatttgaagatgatgacaattctgatgttgctggg
agcagctcaggaggtgcaggagattctttctcaaatccagatgcttggattcaagacaac
actcagaaacgtcaagaacaggagaagaggcagcgcagtgatgcttttgcacagaggata
gataacatgaaagagtcagacttcaagcaggcttacatggccaatgtccatgggaatcag
atgcgtgatgcaagcggcttgtcggctctaaagagagatcagatgggccttgtgaggaaa
gaggcagtggatgaaaagctctatgaagacatgatgcaacaacagaattgcccaaaatat
cagaaaatgttagaagcacgtaagaagcttccatcgtataagatgcgggatgaaattgtg
gatgctgttcgagataatcaagttgtagttataagtggagaaacaggatgtggtaaaact
acacaggttgctcagtttctcctggaagatgcagttgctgatggacaaggatctacttgc
agtattgtttgcacccaacctaggcgtatatcagcgatatctgtggctcaaagggttgca
gatgaacgtggagagaatctggggaagagtgttgggtaccagataaggcttgaagccact
catcctcgacctgaaggctctatcctgttctgtaccactggtattgtacttcagtggtta
cagagtgatcccctccttagtaaggtgtctcacttggttcttgatgaaattcacgagaga
gatatgttgtcagacttcattattgcaattgcaaaggacctaatcaaagttagatccgat
ctgaaggtaattttaatgagtgcaacgctgaatgcagaacttttttctgaatattttggt
ggctgtcccatgctgcatattcctggttttacatttccagtaaaggagttttatcttgaa
gatgttatagaaatgacgagattcaagtttgaagatgaaagagaagtaccaatatgggtg
agaaaaagtaacaaacataaggacaatgaatttgaaggcatgatagcaccatatgtcaga
aacttagaaaggagtgggaagtactcctgccacaccctagatgaactgtacaaatcgaca
agtgaaaagcttaatctggacctggtgcttgagttgttgcgttccatcaatcgtaaggag
cccggagctgtgctagtgttcctgccaggttgggcagatatttccaagctacattcactc
atacaaggcgacagaagtttctctagaagtagccacttggttatccctctccactctctc
atgccctctgtcaaccagcgggaagtgttcaatagaccacctccaggtgtacgcaagatt
gttttagctacaaacatagctgaaactagtataaccatagacgatattgtgtatgtaata
aatgctggacgtatcaagatgaaaaattatgataaagaagctaacttggtgacactgctg
cctgagtgggtcactcttgctaatgccaggcaaagacgaggcagagctggtcgtgtgcaa
gagggtgtctgttaccacctctattcaagagctcgagaacagttgttggatgactatcct
ctgccagaaattcagcgtacacggcttgaggaaatcattctgcatgtgaagatcctgcgc
ttagggtctgcaaaaccatttttggcaaagctcatgatgccacctgatccaaatgtagtt
gacaaatctttggagatgcttcaagctattaatgccctggatgagagtgagaatttgact
ccattaggtttccacttggcacgcttacctgtggaccctttgactggccgaatgctactc
atggcagcgatattctcctgtgtgggccccatattgactattgcctcagctctctcattt
aaagatcctttctcagttcccttgggaaaagaacgtattgtagatgagataaaaaagaaa
atgagtcgcggcacaaagagtgatcatttgatgctagttaatgtctatgatggatgggaa
gatgcatggcgccacagagaagcaagggagtattgctgggacaacttcttatccagtgct
gtgcttgaacaactgaggaacatgaggcgacaatttatgggtctcctttatgagcacaaa
tttgtaaattctaaggatccgcaagcagctgaagctaatcggaactctgacaatattgcc
cttgttcgtgccatcatcacgagtggcctatatccaaacgttgcacgtgttcttcctcaa
agaggacgccccaacccacacaaaccccgtagcatccgcacacagtatgagcgcagggta
tcattacaccccaagtccgtaaatgagaaggagagggaatatgaatctccttggctcatg
taccgagaaaagatcaagtcttccaaggtctacatacatgacagttcaatggttcccaac
tacccattactgttttttggccggaagttgaactatgttgatggcgttatcaatgttgat
gactttgttagggttcgctgctcacgacatgttgcacatttagtacagagtttaagaact
cagctggatgaacttctagaatataaaattagccatcctggtgttacccgatggaataaa
tcaagcaaagagggagcacttctgcacaccattgtagatctcatctctagcgagaagatt
tcctcctcacaggacaactatgactattatgatgatggggatgattag
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