Penaeus vannamei (Pacific white shrimp): 113806131
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Entry
113806131 CDS
T06111
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
113806131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvm03000
]
113806131
Transcription factors [BR:
pvm03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
113806131
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
RHD_DNA_bind
RHD_dimer
Ank_3
Ank_5
Ank_4
Motif
Other DBs
NCBI-GeneID:
113806131
NCBI-ProteinID:
XP_027213048
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All DBs
Position
4:22347330..22372818
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AA seq
1211 aa
AA seq
DB search
MYCDNYFIGGMSSPYSGESASPYSDHSAGVPSPPTVVTAYNRPYEAVHHDGAFIQILEQP
QSKFRFRYKSEMVGTHGQLKADRSDKNKAVFPTVKLAKWNHGPAVIRLMLYTAEDNINQR
KRHVHELSGKQCCKETGICEVVVDEKVDYTAVFQNLGIIHIAKRDTKDIILQRKKEELIT
HARLRKPHLSYEDIRRSITQSDNKRMEEEAEEEAKNMDLNKVVLRFQAFQYDKKIESYRP
VTLPVDSDIVYNLKNATTGELKIVRMSACSAPCTGGTEIWLLVEKVRRNNVQIKFFELDE
NDREVWSGYGDFTDADVHHQYAIVFKTPRYRYTNLSTAVRVKVQLERPTDRDTSEPLDFT
FMPDTLKRRRMLIENAQEEGKRHPSFPPAKRPANFNNYASEAIDLSYNMRNPRGQEDSMP
TPDILELLVGVSDFPNSNGLSPYTLEMSNQSPQHTVPSPGHPSDSSTHELYSPIHPGSVG
TPNTEFTTINNSLLQVPSPGHPVPNSPQYSVMSPGEHSVGSPQSQYQGSGNFGGGNMSQQ
YSQSQSPQYIQSPSPIMMVPSPSYQDNGTQILNQYLQQPQQQQQLQQQQQQQQQQQQQQQ
QQQQQQQFQQQQIQQFPKTQQIGSQLIQGAVDNWLTQQPNNIQLQQQQMQPQALQPQNNV
PEFDLPSCFNIVGGLGPDATLMDMLEVADDQLAFESGLIGNSDIKADYGGKMDSKKKQKD
QAVSSGQDVDELTKMISNVRVDDSRGNRNPQSQVDSMNQHPTQSVDVAFKVAISAAECLQ
AYAATGDISLLLATHRYLLAVQNNQGDTALHTAVSNKNIEAFNKILKACEKIRPQDLLNA
QNFARETALHQAVRGNETIMVRRLVAMPGCDVSIVDAQGNTPVHCAAEMQSIQCLEALLT
RPVNGVRSAVTQAINVYNYQGETPLHLAVINGNLDSVRMLVDAGAQVHLCERKRGANPLH
LAVMHGHHEIARYLLDLTSVTIEAGLFDGNTALHLAAQQRDSEMCKILLRHNADPNAKNM
LQKRKKLSESEEDEEEEEEISSRKVEEEDDDSEEEPDCYTPLDYAGNDAEILSILRGEVI
QEEEEEQGAQAQEEVVGTKAGPLHSALDSGIDISVTDIQYSDGPGEDDSVGELSERVRER
LASHLSGDTWRHLAQLLDLDYMVPCLAGEPSPASTLLHPDNMKVSLGITCPLETDYYRRC
KSLARICQVFS
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtattgcgataattattttataggtgggatgagttccccttacagtggagagtctgct
tctccatactcagaccactcagctggagtaccgtctccaccaacagtggtgactgcctac
aatcgcccatatgaagctgttcaccacgatggagcattcattcaaatactggagcagcca
cagtctaaattccgattccgctacaagagtgagatggtgggcactcatggacagctgaaa
gcagatcgatcggacaaaaataaagctgtttttccgacagtaaagcttgcaaaatggaat
cacggaccagctgtaattcgtctgatgctctatacagcagaagacaatataaatcagaga
aaacggcatgttcatgaactgtcaggaaagcagtgttgcaaggagacgggtatctgtgag
gttgttgtcgatgaaaaagttgactacactgctgttttccaaaaccttggaatcattcac
attgcaaagagggacacaaaagatattattctccagaggaaaaaggaagagttgataacc
catgcaagacttcgcaagccacatctctcatatgaagacattaggaggagcatcacacaa
tctgataacaagaggatggaagaagaagctgaagaggaggcaaaaaacatggacctcaac
aaagtggtcttgagattccaggcttttcagtatgacaagaagattgagagttatcgtcct
gttacattaccagttgattctgatattgtctataatctaaagaatgctacaacaggagag
ctaaagattgtacgtatgtcagcatgttcagcaccatgcacaggaggaacagaaatttgg
ttgctggtagaaaaagttaggagaaataatgtgcagattaaattttttgagttggatgag
aatgatcgggaagtatggtcagggtatggtgacttcactgacgcagatgtccatcatcag
tatgccattgttttcaagacccctagatatagatacacaaaccttagtactgcagtgcgt
gtgaaagtacagcttgaacgaccaacggacagagacacaagtgaaccgttggacttcaca
ttcatgcctgataccttgaaacgcagaagaatgcttattgaaaatgcacaagaagagggc
aagagacatccaagtttcccacctgcaaagagaccagcaaatttcaacaattacgcaagt
gaagctatagatttgagttacaacatgagaaatccacgtggtcaggaagattcaatgcca
acacctgacattttggaactgttggtgggagtttcagatttcccaaacagtaatgggctg
tcaccatacactttagagatgtctaaccaatcaccacagcacactgttccctcacctgga
cacccctctgactccagcacccatgagctttattctcccatacatccaggctctgttggg
accccgaacactgagtttaccaccatcaataacagccttcttcaggttccttcacctggc
caccccgtgcctaattccccccagtatagtgtgatgtctccgggagaacactctgttggc
tcaccacagtctcagtaccagggctccggcaattttggaggagggaatatgtcacaacaa
tattcacaatctcagtcaccacagtatattcaatctccatctccaatcatgatggtgcct
tctccatcatatcaagataatggaacacagattttaaatcagtatctgcaacagcctcaa
cagcagcagcaactacagcaacagcaacaacagcagcagcaacaacaacaacaacaacag
caacagcagcagcaacaacaattccaacagcaacagatacagcagttccccaagacacag
cagataggttcacagctgatacaaggtgctgtagataattggttgacacagcagccaaac
aatattcaacttcaacagcagcagatgcaaccacaagcactacagccacaaaataatgta
ccagagtttgacctgccaagctgcttcaatattgttggtggtctgggtccagatgccact
ctgatggatatgttagaagttgctgatgatcagttagcctttgaatctggcttgataggc
aatagtgacattaaagctgattatggagggaaaatggattcaaagaagaaacagaaggat
caggcagtgagctcaggacaggatgttgatgaacttacgaaaatgatttccaatgttcga
gttgatgatagccgaggcaacaggaaccctcaaagccaagtggactccatgaatcagcat
cccactcagagtgtagatgtggcattcaaggtggcaataagtgctgcagagtgtctgcaa
gcttatgctgcaacgggtgacatttccttactcttagcaacacatcgttatctcttggca
gtacagaacaatcaaggagatactgcactgcatactgctgtaagcaacaaaaatatagaa
gctttcaacaaaatcctcaaggcttgtgagaagatcaggcctcaggatttgctaaatgct
cagaactttgcaagagagacagcattacatcaagcagtccgtggcaatgagaccatcatg
gtgaggaggcttgttgctatgccaggttgtgatgttagcattgttgatgcccaaggaaac
acaccggttcattgtgctgccgagatgcaaagtattcagtgtctggaagctctcctaact
agacctgtaaatggagtccgctcagcagtaacacaagccatcaatgtttacaattatcag
ggtgaaacccctctacacttggctgtaattaacggaaatcttgatagtgtgcgtatgctt
gttgatgctggagcgcaagttcatctttgtgaacgtaaaaggggagccaatccattgcat
ctggctgtcatgcatggtcatcatgagatagccagatatcttcttgatcttacaagtgta
actattgaagctggactatttgatggtaatactgctcttcatttggctgcacaacaaaga
gacagtgaaatgtgcaagatattattaagacataatgctgaccccaatgccaaaaatatg
ctacaaaagcgaaaaaaattgtcagaatcagaggaggatgaagaagaagaggaagaaatc
tccagcagaaaggtggaagaggaggatgatgactcggaagaagagccagattgttacacg
ccacttgattatgctggaaatgatgcagagatcttgtcaatccttcgaggtgaagttatt
caggaagaggaggaagaacaaggagctcaagcacaggaagaagttgttggaacaaaagct
ggcccactacattctgcccttgactctggcattgacatctcagtaactgatatacagtat
tcagatggcccgggagaagatgacagtgtgggtgagctgagtgagcgcgtgcgagaacga
cttgccagccacctgagtggagatacctggcgccacctagctcagctcctagacttggat
tacatggttccttgcttggctggggaaccatctccagcttcaactctcctacaccctgat
aacatgaaggttagcctcggtattacctgcccgctggagaccgattattatcgtcgctgt
aaatccctggcaagaatttgtcaagtattctcatga
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integrated database retrieval system
