Penaeus vannamei (Pacific white shrimp): 113806310
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Entry
113806310 CDS
T06111
Symbol
Clp
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113806310 (Clp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvm03021
]
113806310 (Clp)
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113806310 (Clp)
Transcription machinery [BR:
pvm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113806310 (Clp)
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113806310 (Clp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCCH_RBM22
zf-CCHC
zf-CCCH_4
zf-CCCH_12
zf-CCHC_4
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
113806310
NCBI-ProteinID:
XP_027213228
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All DBs
Position
21:complement(30662302..30675390)
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AA seq
274 aa
AA seq
DB search
MEVIVANVDKITFDIETQLEEQVGAQLLPFPGMDKSVAAVCTFYMRGNCSKSVNCPFRHV
CGDRTVVCKHWLRGLCKKGDRCEFLHEYDMSKMPECYFYSRFNACHNKECPFLHINPDMK
MKDCPWYDRGFCRHGPQCRNRHVRRVLCMNYFAGFCPDGSNCKFMHPRFELPQVTDDKQQ
PHKKLGITCHYCGEAGHKLSHCFRANPELREQNAIISLASGGPRTQPGKENSGPDTQNDG
SNRLDNIVCFKCGQQGHFANRCSKGQFAFLSSGN
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atggaggttatagtagcgaacgtcgacaaaatcacgttcgatatagagacacagttggag
gagcaagtgggagcccaacttcttcctttccccggcatggataaatcagtggctgcagta
tgcacattttatatgcgaggaaattgtagcaaaagtgtgaattgtcctttccgccatgtg
tgtggagacaggacagtggtttgcaaacattggcttcgaggactttgcaagaagggagat
cgctgtgaatttcttcatgaatacgacatgtcaaagatgcctgagtgttatttctattct
agatttaatgcttgccacaacaaggagtgcccctttcttcacattaatcctgacatgaaa
atgaaggactgtccgtggtatgatagaggattctgtcgccacggcccacagtgtaggaat
cgccatgttcgccgtgtactgtgcatgaactactttgctggtttctgtcccgatggttct
aattgtaaattcatgcacccaagatttgaactgccacaagttacagacgacaagcagcag
cctcacaagaaattaggaataacatgccattactgtggagaggctggccataaactgtct
cactgcttcagagcaaatccagaattgcgggaacaaaatgccattattagcttagcatca
ggcggcccaaggacccaacctggtaaagaaaactctgggcctgatactcaaaatgatgga
agcaatcgactggataatattgtttgtttcaagtgtggacagcaaggacattttgccaac
agatgttcgaaaggacagtttgccttcctcagttctggaaattga
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