Penaeus vannamei (Pacific white shrimp): 113807013
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Entry
113807013 CDS
T06111
Name
(RefSeq) DNA excision repair protein ERCC-6
KO
K10841
DNA excision repair protein ERCC-6
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
113807013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvm03036
]
113807013
03400 DNA repair and recombination proteins [BR:
pvm03400
]
113807013
Chromosome and associated proteins [BR:
pvm03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
113807013
DNA repair and recombination proteins [BR:
pvm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
113807013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Motif
Other DBs
NCBI-GeneID:
113807013
NCBI-ProteinID:
XP_027213968
LinkDB
All DBs
Position
36:complement(17606310..17616653)
Genome browser
AA seq
1693 aa
AA seq
DB search
MMETQGRTILVPAGVAESTRNSISNNPEEEKEVVFNASSILSSLLTKDRDTGTSESRTYG
AADQDLQDQDDELRALGISVVDQLSLERDVEAAVDQAVAKHSRKQRFQILKKEIKDVKTD
IKQAENKLLSLRERLAGMRQRVVDPRQVISVEKEISNKSNQLKTLRAREKSLQQKLISAE
ANEEELDDLDLEDGEIPEDEDDENDGSRKEPKMSELEREKLIREGKMTPFGTVMSQNSSK
TVSVLRPAHTPMEKRMAAEALKRKGASGGPSKADMIKSGEMTPFGTVVKSKPKDAGPSKI
SSNKPSGGMSDFEKYLKDQIDRQKQHSETSKGTKRKKNKGDPNYGFAKKRKKKPKEFIGE
YYRDDEEESDENDSTSLSAIKKQAQEKFETGIKKKEKSSKKDPLKMKVLHPKKKRNEKNL
GSVTSEREADLLKETPQRILSEKIEFKGGESDDPYHGDGSGSEYRPSDSDGEVYSDEYVD
SCGDDEIPESSKRKSIRIDKKEKKQRKRKDDEWSDDNEFDDAPRRQGRKTAKERDDGNIE
DYIQRIEAWKEERLRKKQAKILQGGDLDSEEEEEEGYEEFDGGYRIPLGVWNKLFKYQRT
CVKWLWELHNQGCGGILGDEMGLGKTIQIISFLIGLSYSRLSCRRQSWKGLGPVLIVCPA
TVLHQWVKEFHKWWPPFRVAVLHESGCFAGKRGALIHNINQHDGILVTSYTGVLAQLEIL
LQYNWHYIILDEGHKIRNPEAQITVAMKRFSTPHRLILSGSPIQNSLKELWSLFDFIFPG
KLGTLPVFLQQFAVPITQGGYANASKLEVQTAFKCASMLRDTINPYLLRRMKCDVRNHLK
LPDKNEQVLFCDLTEAQRQVYRSYIDGDQVKCILGGRMKVFVGLIALRKICNHPDLQTGG
PRNYDDQFVSGLQPELQYGWWGRSGKMHVLQSILKLWAKQGHRVLLFTQSRQMMCILEKF
LMDEHHSYLKMDGTTAVASRQVMIDKYNNDPSYFVFLLTTRVGGLGVNLTGADRVIIFDP
DWNPSTDSQARERSWRIGQTRHVTIYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQQR
FFKTNDLYELFSLNEGIKEKTESSAIFAGTGSEIKVNTQDKNDEGKSDDDNEETSKKGER
HTNKLPPPHLPQTPSKRESKASHTSKNSQKKEPKDQKKVEDNSKSNHKTPSKEKVEPVDN
KVERMRELAKLLSKKIGQKTSIKEEKKDVIKSLENNQGIITGSESGSESQNCSKMEPETE
SQVITTEVTTIKQEPEDLSEIGTKEEVESVTGEKEDSNIKIEDLYSDSIKKESDDGITSE
SREGSLESSCNSEYFAKKRKDRKRESHSDSTDADRKHDSKDHERHRKKHKKEKKKDKHKS
RDKSKKKGKKFEGERIDFLVKKRVYQKTEEEEQAERESAKSQDQYVLEKLFKKSGVHTAL
SHDAIMSNGDPDYLLVESEAERVAKEALKAVRASRARCFRPQLPAGPSEQQSKSKPRFGT
KKSSIFSSSTDSEAKPPKEEKKKKEKKPHVFDGGMDEEDEEDEADAKTGTTGLPTSISPS
KKGKGFGQGKSSTLSSSQLLQRMRQRNRGMAMESEGEDSDGYDPDYPSTAPMEEEVTDPE
VKENIDLLADIRNFVAFQARVDGKASTQEILDRFKERLPAEQTPFFKALLTEICDFQREA
GGEGLWILKGEFR
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaacacaaggaagaaccatactggttcctgctggagtggcagagtcaaccagg
aactctatttccaacaatcctgaagaagagaaggaagtagtgttcaatgcctcaagtatc
ctgagcagtctcctcaccaaagatcgagatacagggaccagcgaatcgagaacctatgga
gctgcagatcaagacttgcaggaccaggatgatgagctcagagccttgggcatctctgtg
gttgaccagctctcacttgaaagggatgtagaggcagcggtggaccaagctgtggctaag
cattctcggaagcagcgtttccagatcctcaagaaggaaataaaagatgtcaagacagac
ataaagcaggcagagaacaagcttctcagcttaagagagaggctggcaggaatgcgtcag
agggttgtcgatcccaggcaggtcataagtgtggaaaaggagatatcgaataagtccaac
caactaaagaccttgagagctagagagaagtcactgcagcagaagctcatatctgctgag
gctaatgaggaagagcttgatgaccttgacctcgaagatggcgaaattcctgaggatgaa
gacgatgaaaatgatggtagcaggaaggagccaaaaatgtcagaactagagagagagaag
cttattcgagagggcaagatgactccctttggcacagttatgtcccagaactcttcgaaa
acggtttcagtgcttcgcccagctcatactcctatggaaaagagaatggctgcagaggcc
cttaagaggaagggggcaagtggagggccatcaaaggcagatatgatcaagtctggggaa
atgacaccttttggaacagttgtaaagtccaagccaaaagatgcaggaccttcaaaaata
tcttcaaacaagcccagtggtggcatgagtgactttgaaaaatacttgaaagaccagatt
gaccgacagaaacagcacagtgaaacaagcaaaggcacaaaacggaagaaaaacaaaggg
gacccaaactatggctttgcaaagaagaggaagaaaaagcccaaggaatttataggcgaa
tactacagagatgatgaagaggaaagtgatgaaaatgacagcacatcactatcagcaatt
aagaagcaagcccaagaaaagtttgaaacaggcataaaaaagaaagagaaatcatctaaa
aaggacccactcaagatgaaggtcctgcaccctaagaagaaaagaaatgagaagaacctg
ggaagtgtgaccagtgagagggaggctgacttgctcaaagagacgccacaaaggatatta
tcagaaaaaatagaattcaaaggaggtgagtcagatgacccatatcatggggatggcagt
gggagtgaataccggccatctgattctgatggggaagtatatagtgatgaatacgttgat
tcctgtggtgatgatgagatacctgagtccagcaagagaaaaagcattcgcattgacaag
aaggagaagaaacaaagaaagagaaaggatgatgagtggtctgatgacaatgaatttgac
gatgccccaaggcgacagggaagaaagacagccaaggagagagatgatgggaatattgaa
gattacatccagaggatagaggcctggaaagaagagaggcttaggaagaagcaagccaaa
atcctgcaagggggagacctggactcagaggaggaggaagaggagggctatgaagagttt
gatggaggctacaggattcccctaggggtgtggaacaagctcttcaagtaccaacgtaca
tgtgttaagtggctttgggagctccacaaccaagggtgcgggggaatattgggtgatgag
atgggcctcgggaagaccatccagatcatatccttcctgataggactttcatactctcgc
ctttcttgccgtcgccaatcatggaagggtcttggtcctgtccttattgtgtgcccagcg
actgtgcttcatcagtgggtaaaagaatttcacaagtggtggccacctttcagagtggct
gtgctgcatgagtctggttgctttgcaggcaagcgaggagcactcatacacaacattaat
cagcacgatggcattctggtgacctcttacacaggtgttttggctcagttggaaatatta
ttacaatataattggcattatatcatcctggatgagggacacaaaattcgtaacccagaa
gcccagatcacagtggccatgaagcgtttttccaccccccacaggctgattctctcaggt
tcccccattcaaaatagcctaaaggaactttggtcactgtttgacttcatatttccggga
aagcttggaacattaccagtctttctgcagcagtttgctgttcctataacacaaggagga
tatgcaaatgcatcaaaactagaggttcagacagccttcaagtgtgcctctatgttgcga
gacaccattaatccatacctacttcgtcgtatgaagtgtgatgtgaggaaccacttaaag
ttaccggacaaaaatgagcaggtgctcttctgtgatctaactgaggcccaaaggcaagtc
tatcgatcgtacattgatggggaccaagtaaagtgcatcttaggaggaagaatgaaggta
tttgttggtttgatagctctacgaaagatatgcaaccacccagatctgcaaacaggagga
cctcgtaattatgatgatcagtttgtgtctgggcttcagcctgagctccagtatggctgg
tggggtcgttctggaaaaatgcatgtcttgcaatccattctgaagctgtgggccaaacaa
ggtcaccgtgtcctcctcttcactcagtcgaggcagatgatgtgcatcctggagaagttt
ctgatggatgaacatcactcgtatctcaagatggatgggacaacagcagtggcatcacgt
caggtaatgattgacaaatataacaacgatccttcatattttgtgttcctgctcacaaca
agggttggtggccttggggtcaacttgacaggagctgacagggtcatcatttttgaccct
gattggaacccttcaacggattcccaggcacgagaacgatcttggagaatagggcaaact
cgacatgttactatttataggcttttaacagctggcaccattgaggagaagatttaccac
cgtcagattttcaagcagttcctgaccaatcgtgtgctgaaggatcctaagcaacagcgc
ttcttcaaaaccaatgacctctatgagctcttctcactgaatgaaggcatcaaggagaag
actgagtcatcagcaatatttgctggcacagggtcagaaattaaggtaaatacgcaagac
aaaaatgatgagggtaaatcagatgatgacaatgaagaaactagcaaaaaaggggaaagg
cacacaaacaagttgcctcctcctcatcttccccaaactccatcaaaaagagagagcaaa
gcatcacacaccagtaagaacagtcagaagaaggagccaaaggaccagaaaaaagtagag
gataacagtaagagtaatcacaaaacgccctcaaaggagaaggttgaaccagtggataat
aaggtagaaaggatgagagaattagcaaagcttttaagcaagaagattggacagaaaact
agcataaaagaggaaaagaaagatgtaatcaaaagtctagaaaataaccaaggaattatt
actggttcagagagtggaagcgaaagtcaaaattgctctaaaatggagcccgaaacagag
tctcaagtaataactacagaagtaacaacaataaaacaagaaccagaagacctcagtgaa
ataggaacaaaagaggaagttgaaagtgtaactggagaaaaggaagacagcaacataaag
atagaagatctttatagtgacagtattaaaaaggagtctgatgatggtatcacttcagaa
agcagagaagggtcattagaaagctcatgtaatagcgagtattttgccaaaaagaggaag
gatcgcaagcgagagagccattcagattcaacagatgcagacagaaaacatgattctaag
gatcatgaaagacacaggaaaaaacataagaaggaaaagaagaaggacaagcacaagagc
agagacaaatcaaagaaaaagggaaagaagtttgaaggggagagaattgacttcttggtg
aagaagagggtttatcagaagacagaggaggaagagcaggcagaaagggaaagtgccaag
tcacaggaccagtatgtactagagaagctgttcaagaagtcaggtgtacacacagctctc
agccatgatgccatcatgagcaatggcgaccctgactacctccttgttgagagtgaggct
gagcgtgtggccaaggaagcactcaaggctgtaagggcatctcgtgctaggtgcttcaga
ccacagctgccagcagggccttctgaacagcagtcgaagagcaagccaagatttggcact
aagaagagcagcatcttctcctcttctactgatagtgaggcaaagccacctaaagaggaa
aagaagaagaaggagaagaaaccacatgtttttgatggtggtatggatgaagaggatgaa
gaagatgaagcagatgcaaagactgggactactggcttgcccacttccatctcaccctcc
aagaaaggcaagggctttggccaagggaagagcagcacgctctcctcatcacagctgctc
caaaggatgcgtcagaggaacaggggcatggctatggaatcagaaggggaagacagtgat
ggctatgacccagattacccctctactgcacccatggaagaagaggtcactgatccagag
gtcaaagaaaacattgacctgcttgctgacattcgcaattttgttgcattccaagctaga
gttgatggaaaagcctctacgcaggagatcctagatagattcaaagagaggttgccggca
gaacagactccatttttcaaggctctattgacagagatttgtgatttccagagagaggca
ggtggcgaagggttgtggatactgaagggagagttcagataa
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integrated database retrieval system
