Penaeus vannamei (Pacific white shrimp): 113807104
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Entry
113807104 CDS
T06111
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113807104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvm03041
]
113807104
Spliceosome [BR:
pvm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113807104
Complex C
U4/U6.U5 tri-SnRNP related factors
113807104
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Peptidase_M26_C
Motif
Other DBs
NCBI-GeneID:
113807104
NCBI-ProteinID:
XP_027214082
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Position
3:complement(46924983..46946070)
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AA seq
415 aa
AA seq
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MKAGAYEYEEEGEKGGANKKPNGLPIWGNEKSMNLNPLILTNIQSSQYFKVNLYQLKTYH
EVIDEIYYNVTHLEPWEKGSRKTSGQTGMCGGVRGVGAGGIVSTAFCILYKLYTLRLTRK
QVTGLLNHSDSPYIRGLGFMYIRYTQPPADLWDWFEPYLDDEEEIDVRAGGGQTITIGQV
VRHMLTKLDWYSTLFPRIPVPIQKDLDNKLGERASSRPALSAAAPAKTERYAGRGEAEPP
AKEGSRVYEGENREYNSRERGTAKERDRDYDRERDRERDRDYERDRGKEREHEKEKERDG
DRRKERSHEKSRDHPRERNGDCDRGRDRHRDRDRDHHDRHRNRDKDRRRSRSRSHDRKHR
HHHDRYAEDRGHRDFADLLEREKHRIKKEKKTDGSRDHYHRSRSRSRDRDRRHRY
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcaggagcttatgagtatgaagaggagggtgagaagggaggagcaaacaagaag
ccaaatggactgcctatttggggcaatgaaaagtccatgaacttgaacccccttatccta
accaacatccagtcctcacagtatttcaaagtgaatttgtaccagctgaaaacctaccat
gaggtgattgacgagatctactacaatgtgacccaccttgagccttgggagaagggcagt
cgcaagacctcaggccaaacaggaatgtgtgggggggtacgaggtgtgggtgcaggaggc
attgtctctacagccttttgcattctctataagttgtacacacttcgactcacaagaaaa
caggtgacagggttactgaatcacagcgattctccatatattcgtggtcttgggtttatg
tatataagatatacgcagccgccagcagacctgtgggactggtttgaaccatacttagat
gatgaggaggaaatagatgtgcgagcaggagggggtcagaccatcaccataggtcaggtt
gtgcgtcacatgctcaccaagctagactggtactccaccctattcccaagaatccctgtg
cccatccagaaggacttggacaacaagctgggagagcgtgcttcatccagaccagctctg
tctgctgctgctcctgccaagacagagaggtatgcaggtcgaggggaagcagagccccca
gccaaggaaggcagccgtgtatatgaaggcgagaatagagagtataattctagagaacga
ggtacagcaaaagagagagacagagactatgacagggaacgggatagagaaagggacaga
gattatgagcgagaccgagggaaagagagagaacacgagaaagagaaagagcgagatggt
gacagacggaaggagaggtctcatgagaagtcgagagatcaccctagggagaggaatggc
gactgtgacagaggtagagaccggcatcgggacagagacagagaccatcacgaccgtcac
agaaaccgggacaaggacaggaggagaagcagaagccgcagccatgacaggaagcacagg
caccatcatgacagatatgctgaagacagaggtcacagagactttgctgatctccttgaa
agagaaaagcatcgcatcaagaaggagaagaaaacagatggcagtcgagatcactaccac
agaagtcggtctcgctcccgcgacagagatagaaggcatcggtattaa
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