Penaeus vannamei (Pacific white shrimp): 113807124
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Entry
113807124 CDS
T06111
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03440
Homologous recombination
pvm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113807124
03460 Fanconi anemia pathway
113807124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvm03032
]
113807124
03400 DNA repair and recombination proteins [BR:
pvm03400
]
113807124
Enzymes [BR:
pvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
113807124
DNA replication proteins [BR:
pvm03032
]
Eukaryotic type
DNA Topoisomerases
113807124
DNA repair and recombination proteins [BR:
pvm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
113807124
FA (Fanconi anemia) pathway
113807124
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
Motif
Other DBs
NCBI-GeneID:
113807124
NCBI-ProteinID:
XP_069983330
LinkDB
All DBs
Position
11:31932471..>31962285
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AA seq
1182 aa
AA seq
DB search
MLPAGALSTRRSLTTCLLKPSVQWFTEGFNTPARVCCRKLIPSFVRHNKAKHLYHKETHT
TVDSRGSFLHVRGNLFQHVLKVNCARSDRVWVAVRSCGVRFIHGAVVRSAEDSTPTDRAK
MVRVLSVAEKNDAAKNLAEIMSRGGYNRREGYSKFNKIYEWDMMLRGEQCHMVMTSVSGH
LLNQSFTGHYRKWTSCNPLHLFDAPVVKICTQDMEPIKRTLEKEARAATRLIIWTDCDRE
GENIGYEVIEVCKAVKPSLHVLRAKFSEITFQSVQRALQSLGPPDRKQSDAVDVRSELDL
RIGAAFTRFQTLRLQKVFPQALADTLISYGSCQFPTLGFVVERYKAIQAFIPEQFWKIKV
SHNGEEGVIDFAWGRVRLFDELACQVLFEMCQENPQARVTKITTKRKSKWRPLPLDTVEL
EKLASRKLRINAKETMKVAEKLYTQGFISYPRTETNIFPKELNLVPLVEMQCQDQEWGGF
AGRVLEEGPNPRQGRKSDQAHPPIHPTKYASNLQGNEKRLYEFIVRHFLACLSKDAQGQE
TTVEIVIAGEEFTASGLIILERNYLEVYPYDRWSDKVMPRYEQGQVFEPTTIDMVGGETS
PPQLLTEADLIALMEKHGIGTDATHAEHIETIKSRMYVGLQDLRFVPGQLGMGLVEGYDS
MGFQMSKPNLRSELEADLKRICDGVKDPKVVLQEQVLKYRQVFEEAMRQAEKIDTALGHF
LNEEPRRNLPDTPIPDVPQFESVCKCSSCGCDVILKEKREGRGFYLSCQGFPDCRVCVWL
PDTILSVAVLEETCNQCAGSPRKLRFKFKPRSYMPYIPDEYVACVCGCDQDFLDTLDIRA
ITAVGPQASQGGGGRPRASGGRTSPSRNSWDSGYMSSSSSSHPATLPNSNQRRIVFGQRG
ASSGANTSNSNRQNNNNNSSFPSPSSTFSRSPLRPPRGRGRGSRGSHNASSSSRDSGFSS
FGSSQSQPRPSWGGTANGSEDQENAIVCNCNEDAIMLTVRKEGPNTGRQFYKCSKPQGQG
CNFFLWADDGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGWGGGSGSWGGGGSMRGGSG
GGSSQWNGSSSSSSWNGGFNSGADDTTDWEGAVVCNCSIPGKRLTVQKEGPNKGREFYVC
SKDRSEQCRFFKWADEVDEGGGGGGGGMSSWGGGGGEWMSTS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgttgccagctggtgctctgagtacaagaagatccctaactacgtgtctacttaagcct
tcagtgcaatggtttactgaaggtttcaacactcctgcccgtgtttgttgcagaaaactt
attccttcttttgttagacacaacaaagctaaacatctgtatcacaaagaaacacacacc
acagttgattcacgtggctcttttcttcatgtaaggggaaatttatttcagcatgtcctc
aaggttaactgtgctaggtcagatagggtgtgggtagctgtcaggagctgtggggtcagg
tttattcatggtgcagttgtcaggagtgcggaggacagcacacccacagacagagcaaaa
atggtgcgtgtactcagtgttgcagagaagaatgatgcagcgaagaacttggctgaaatc
atgtcccgagggggatataacagacgggagggctatagcaaatttaacaagatctatgaa
tgggacatgatgctacggggagaacagtgccatatggtgatgacctctgtatcgggccat
ctcctcaaccagtcgttcacagggcactaccgcaagtggactagttgcaacccactgcac
ctctttgatgcgccagttgtcaagatctgtacacaggacatggagcccatcaagcgtacc
ctggaaaaggaagctagagctgcaacacgcctgataatctggacagattgtgatcgtgaa
ggggagaacattgggtatgaagtcattgaagtatgcaaagctgtgaagccttctctccat
gttttgagggccaagttctcagagatcacgtttcagtcagtccagagggctttgcagtcc
cttgggccgcctgacagaaagcagagtgatgctgtagatgtgcgcagtgagcttgacttg
cgcattggagcagcctttacacgtttccaaacactccgcctgcagaaggttttcccgcag
gctttggctgatacactcataagttacggatcttgccagttcccaacacttggttttgtg
gtagagcgttacaaggccattcaagcatttatacctgaacaattttggaagattaaagtc
agtcataatggagaagagggagtgatagactttgcttggggacgtgtccggctgtttgat
gagctggcttgccaagtgctttttgaaatgtgtcaggagaatccccaagcacgagtgacg
aaaattacgaccaaacgcaagagcaagtggcgaccactgcctcttgacacagtggagctt
gagaagctggcatcacgaaaactacgcataaatgccaaggagacaatgaaagttgctgag
aaactctatacccaaggtttcatcagttacccccgcacagagaccaacattttccctaaa
gaactaaatcttgtacctttagttgagatgcagtgccaagatcaagagtggggaggtttt
gctggcagggtgttggaggaagggcctaacccacgccagggcagaaagtctgaccaggcc
catccccccatccaccccaccaagtatgcaagtaacctacagggcaatgaaaagaggcta
tacgagtttattgtgcgccatttccttgcgtgtctgagcaaagatgcacagggccaggag
accactgtggagattgtcattgctggggaagagtttactgctagcggcctaatcatcttg
gagaggaattacctggaggtgtacccttatgaccgctggagtgacaaggtgatgccacgc
tatgaacaaggccaggtgtttgagcccactaccattgacatggttggtggggagacatcg
ccgccccagctgcttacggaggctgatctaatcgctctcatggaaaaacatggcattggc
actgatgcaacacatgcggagcatattgaaacaatcaagtcacgcatgtatgtggggctg
caggacctacgctttgtgccaggacagcttgggatgggacttgttgaagggtatgactct
atgggcttccaaatgtccaagcccaacttgcggtctgagctggaggctgatctcaagagg
atctgtgatggagtgaaggaccccaaggtcgtcctgcaagagcaagttctcaagtatcgg
caggtgtttgaagaggccatgaggcaggcagagaaaattgacacagcacttggccacttt
ctaaatgaggagccacggaggaacctacctgacacaccgattcctgatgtccctcaattt
gagtcggtgtgcaaatgttcttcttgtggctgtgatgtgatcctgaaagagaaacgtgaa
ggtcgtggcttctacctctcgtgccagggtttccctgactgccgtgtctgtgtttggctg
ccagacaccattctttctgtggctgttttggaagaaacgtgtaatcagtgtgcgggctca
cccagaaaactccgattcaagttcaagccccgttcctatatgccatatatccctgatgag
tatgtggcgtgcgtgtgtggctgtgatcaagactttcttgacacactggacatccgagcc
atcactgctgtaggaccgcaggcctcgcaaggaggtggaggacggccaagagcatcaggt
ggacggacttccccaagcaggaactcttgggacagtggctacatgtcttcatcatccagt
tctcacccggccacgcttcccaatagcaaccagagaaggattgtgttcgggcagcgtggc
gccagcagtggcgccaacaccagcaatagcaacagacagaacaacaacaacaacagttca
ttcccgtccccctcgtccacctttagtagaagccccttacggcctccgcgtgggagaggt
aggggtagccgagggtcccataatgccagttcttcgtccagggactcgggattctcgtct
ttcggttcctctcagtcacagcctcggccgagctggggcggcacggccaacggcagtgag
gaccaagagaatgccatcgtctgcaactgcaacgaggacgccatcatgctcaccgtcaga
aaagaaggtcccaacacaggtcgacagttttataaatgttcgaaacctcagggacaaggc
tgcaatttcttcctctgggcagatgatggaggaggaggaggaggaggaggaggaggagga
ggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggagga
ggatggggaggaggaagcggaagttggggaggaggaggaagcatgcgaggtggaagcgga
ggtggaagcagtcagtggaatgggagttcttcatcgtccagctggaatggaggcttcaat
tcaggagctgatgacacgaccgactgggagggcgccgtggtatgcaactgcagcattcct
ggcaaaagactgacggtgcagaaggaagggccgaacaaagggcgggagttctacgtctgc
agcaaggaccggagcgagcagtgtcgtttcttcaagtgggcggatgaagtggacgaagga
ggaggtggtggcggtggtggtatgagttcctggggaggaggaggaggtgagtggatgtcg
acctcctga
DBGET
integrated database retrieval system
