Penaeus vannamei (Pacific white shrimp): 113807183
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Entry
113807183 CDS
T06111
Symbol
Ctf4
Name
(RefSeq) WD repeat and HMG-box DNA-binding protein 1
KO
K11274
chromosome transmission fidelity protein 4
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvm03036
]
113807183 (Ctf4)
Chromosome and associated proteins [BR:
pvm03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
113807183 (Ctf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
Mcl1_mid
Ctf4_C
WD40
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_Aladin
Beta-prop_TEP1_2nd
HMG_WDHD1
Beta-prop_HPS5
Beta-prop_EML
HMG_box
Beta-prop_RIG_2nd
Beta-prop_Vps41
NBCH_WD40
DUF6476
Motif
Other DBs
NCBI-GeneID:
113807183
NCBI-ProteinID:
XP_069986368
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All DBs
Position
15:872998..886213
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AA seq
1082 aa
AA seq
DB search
MESKKMRPTRYAHFEGHTDLCYTNDGRYIITCGTDGEVRVFEGLDDDDCKTHVVAECAHS
IAYQDGRFLVGTDSNLVQAYTLDEGSPDGIITRFTAPTTHIVVSKDAKTVVCAGSDMTIK
VHDTVAYKDKVLNGHQAPVLSVALDPKGEFVASSSCDGSVKMWDLQMSVTVASWNVVPKT
NSFSSSLTLCRMAWTPDGQYLLVPAGMQVNAYARKNWQIHHSLEHESIKEMVSLAAVSSC
GRFVAGACRDGVILVWDANSHQIILSEKHPKGLAITGMAWNPSGKEELAFVDCDGQLGTL
ENIIEGDYVSKPGKSDTEKADGVFPPVDVDMGEEDDEFSLARIKQQLGFADDEQGTFVGL
PEDNDLLSGDPRKKVKDDDTASIVTTKTEVPPAPVMKLPEIQKPFQPGMSPEHLNDRYML
WNNVGIVRQYSSEDENSIDVEFHDTSVHHALHLNNNSGHSMAALSTQALALACEAQDDQP
SKLAVQHFSAWGGSKEWHVDMPSEEEILALCIGVGWLAVATDRRNLRIFSTSGIQRDVLS
IPGPVVCLAAFEEQLMVVFHSGMGVSGDQHMAAIVLSVNGNKHPVPLSCPLPLSPRSYLA
WAGFTDEGTPAVMDSAGIIRMMHFKYGYNWTVILNTKNHTKGKSDNYFMLGVSETQGNVR
CILCKGGRYPPVLPKPHVSIISIQVPLCELETEKGGLEEKTLRSGLLLNSLERLGRQGYD
IEDSKNEADKILKEAMIKLFALACRTERESRALEVCQLMPSYHTVQLAIKYAGKLHRLQL
ADKLGEVASAKMQEEMERAAKAQGVEEDDLQMYGSGMRRIRTRDEDEDEEDDYSEQVQES
VENEEAVVDNPLLAAASRRENTTPRGGLLSSQNSKNPFKKSGTPSSAPQSGKRGINVIDQ
FRKAQKKMDSSPVLRPVVKKPQAKQTTLKKESQEEPPVPSGKENVSENIPEETPKPSATN
PFKKVEKATDTPPKKQSALQLWLADNEKVVKEKYPDASEKDLLAKAAMMFKDVDADTKQK
YKALATGTPTATTTPAAETTTAPNEEDKKRKREETTPESPIEKKAKGSGLNKLAAFAFNK
DS
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgaagaagatgagaccgacgagatacgcccatttcgaagggcatacggacctc
tgttacaccaatgatggaaggtacataataacttgtggcacagatggagaagtccgtgtc
tttgaaggtctcgatgatgatgactgcaaaacgcatgtagtggcagagtgcgcgcattcc
attgcctatcaggatgggagatttttggttggcactgacagcaacctggtccaagcctac
accctggatgaaggctctcccgatggcattatcaccaggttcactgccccgactacacac
attgttgtcagcaaggatgcgaagactgttgtctgtgctggaagtgacatgaccatcaag
gtgcatgacacagtggcctacaaggacaaggtcttgaatggtcaccaagcacctgtcctc
tctgtcgcactggaccctaaaggtgagtttgtagcatcctcgtcatgtgatggaagtgtt
aagatgtgggacctgcagatgtctgtgacggtggcctcctggaatgttgtacccaagaca
aacagtttctcatcctcgctgaccttgtgtcgcatggcttggacgccagatggccagtac
ctcctcgttccagcagggatgcaggtcaatgcttatgctcggaaaaactggcagattcac
cattctttagagcatgagtctataaaagagatggtatccttggctgcagtgtccagctgt
gggcggtttgttgctggggcttgtcgagatggtgtgatcctggtttgggatgccaacagc
caccagatcatcctctcggagaagcatccgaaaggtcttgccattacaggaatggcgtgg
aaccccagtgggaaagaggagttggcattcgttgactgtgatgggcagttggggacgctg
gagaacatcattgagggagactatgtatcaaagccaggaaaatcagacacagaaaaggct
gacggagtcttccctcccgttgatgtagacatgggagaggaggacgatgagttttctctg
gccaggattaagcagcagttagggtttgcagatgacgaacaaggcacattcgttggactg
cctgaggacaatgatcttctcagtggagacccacgtaaaaaggtgaaggatgatgacaca
gcaagcatcgtcaccaccaagaccgaagtgccgcctgcccctgttatgaagctccccgag
attcagaagcccttccaacctggcatgtctccagagcacctcaatgacagatatatgcta
tggaacaatgttggcattgtgcggcagtattcaagtgaggatgagaacagcatagacgtt
gaatttcatgacacctcggtgcaccatgcccttcacctcaacaataacagtgggcacagc
atggcagcattgtccacccaggccctagcgctagcctgtgaagctcaagatgaccagccc
agcaagttggcggtgcagcacttttcagcctggggaggaagcaaggagtggcatgtggac
atgcctagtgaggaagaaatcctggctttgtgcattggagtgggctggctggctgtggca
actgaccgcaggaacctcaggatcttctcaacgtcaggcatacagcgggatgtcctaagc
atccccggccctgtggtgtgtctggccgcttttgaggaacagctgatggtcgtcttccac
agtgggatgggtgtctctggcgatcagcacatggcagccatcgtccttagcgtaaatgga
aacaagcaccccgttcccctctcttgccccttgcccctctccccccgctcctacctggcc
tgggctggattcactgacgagggtactccagccgtcatggacagtgctggcatcattcgc
atgatgcacttcaagtatggctacaactggacagtcatcctcaacacaaagaatcataca
aaaggcaagagtgacaattacttcatgctgggtgtgagcgaaacacagggcaatgtacga
tgcattctctgcaagggtgggcgctatcctcctgtgttgcccaaaccccatgtctctatc
attagcatacaggtaccattatgcgagttagaaacggagaagggtggcctcgaagagaag
acgctgcgctctggtctcctgctgaattccctagagcgtcttgggcgccagggctatgac
atagaggactcgaagaatgaagctgacaagatccttaaggaagccatgattaagctgttt
gctctggcgtgccgcactgagcgtgagtctcgagccttggaagtctgccagctgatgcca
tcataccatactgtccagctggctataaagtatgcaggaaagcttcaccgtctccagctg
gcagacaaactgggcgaggttgcatcagccaagatgcaggaagaaatggagagagctgcc
aaggcacaaggggttgaggaagacgatttacaaatgtacggcagcggcatgagaagaata
agaacaagagatgaagatgaggacgaagaggatgattactctgagcaggttcaggaatca
gtggaaaatgaggaagcggttgttgacaacccattactagcagctgcatcgagaagagag
aataccaccccacgtggaggcctcctctcctcgcagaactcaaagaaccccttcaagaaa
agtggcactccctcatcagcaccgcagagtgggaagcgaggcatcaatgtcatcgatcag
ttcagaaaagcccagaaaaagatggactccagcccagtgttgaggcctgttgttaaaaaa
ccacaggccaagcaaacaacactcaagaaagaatcgcaggaagagccaccggttccttca
gggaaggaaaatgtctcggagaatatacctgaggagacccccaaaccatctgcaacaaac
ccatttaagaaagtggagaaggccactgatactcctcccaagaagcagtcagcactacag
ctgtggttggctgacaatgagaaagttgtgaaggaaaagtaccctgatgccagtgagaag
gatctactggccaaggctgcaatgatgttcaaagatgtggatgctgatacaaagcagaaa
tacaaagctctggcaactggtactcctacggcaacaacgacaccagcagcagaaacgacc
acagccccaaatgaagaagataaaaagcgaaaacgcgaggaaaccactccagaatctccc
attgaaaagaaggccaagggttcaggcttaaacaagcttgctgcatttgctttcaacaaa
gattcatag
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