Penaeus vannamei (Pacific white shrimp): 113807359
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Entry
113807359 CDS
T06111
Symbol
HDAC1
Name
(RefSeq) probable histone deacetylase 1-B
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03082
ATP-dependent chromatin remodeling
pvm03083
Polycomb repressive complex
pvm04330
Notch signaling pathway
pvm04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113807359 (HDAC1)
03083 Polycomb repressive complex
113807359 (HDAC1)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
113807359 (HDAC1)
04350 TGF-beta signaling pathway
113807359 (HDAC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvm03036
]
113807359 (HDAC1)
Enzymes [BR:
pvm01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
113807359 (HDAC1)
Chromosome and associated proteins [BR:
pvm03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
113807359 (HDAC1)
HDAC complexes
Sin3A-HDAC complex
113807359 (HDAC1)
BRAF-HDAC complex
113807359 (HDAC1)
REST complex
113807359 (HDAC1)
SHIP complex
113807359 (HDAC1)
MiDAC complex
113807359 (HDAC1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
113807359 (HDAC1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
113807359 (HDAC1)
Chromatin remodeling factors
NuRD complex
113807359 (HDAC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
113807359
NCBI-ProteinID:
XP_069986541
LinkDB
All DBs
Position
15:12591013..12604981
Genome browser
AA seq
483 aa
AA seq
DB search
MSAAPHNRKKVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAT
QDEMTKFHSDDYIRFIRSIRPDNMNEYNKQMQKFNVGEDCPVFDGLYEFCQLSSGGSIAG
AVKLNKQACDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDESYDSI
FVPIMTKVMETYQPSAIVLQCGADSLSGDRLGCFNLTLKGHAKCVEFVKKYNLPLLLLGG
GGYTIRNVARCWTYETAVALNTEIANELPYNDYFEYFGPDFKLHISPSNMANQNTPEYLD
KIKTRLFENLRMLPHAPGVQSIAIPEDGVAEESEDEDKASPDERISIRASDKRIAPDNEY
SDSEDEGDGRRDERSFKPKKKTKTDESATNNGAGEDKKDPSITSAKEEKSGSQVGQNETK
VES
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgcaccgcacaacaggaagaaagtctgctattactatgacagtgatattgga
aactattactatggccagggccatcccatgaagccacacaggatacgcatgactcacaac
ctcctcttgaactatggactgtaccgcaagatggagatatatagacctcataaagcaact
caagatgagatgaccaagttccacagtgatgactacataaggtttataaggtccattcgt
ccggataacatgaatgagtacaataaacagatgcaaaagtttaatgttggagaagattgc
ccagtctttgatggcctgtatgagttttgtcagttatcttctggaggctccattgctggt
gctgtgaagctgaacaaacaagcttgtgatattgctattaactgggctggtggacttcac
catgcaaaaaagagtgaagcttcaggtttctgctatgtgaatgacattgtcttagccatt
ttggagctgctgaagtatcaccagcgagttctgtacattgatattgacattcatcatgga
gatggtgttgaggaggccttctacaccacagaccgtgttatgactgtctccttccacaag
tatggagagtatttcccagggactggagacctaagggatattggtgctgggaagggtaaa
tattatgctgttaacttcccactaagagatggcatagatgatgaaagctatgacagcata
tttgtaccaataatgacaaaggtaatggaaacctaccagccctctgcaattgttcttcag
tgtggtgctgactccctctctggagacaggcttggttgtttcaacctcaccctaaaaggc
catgcaaagtgtgttgaatttgtcaagaagtacaacctgcccttacttttgcttggtgga
ggtggatacaccatccgtaatgtagcaagatgttggacatatgaaacagctgttgctttg
aacacagaaattgcaaatgaacttccatacaatgattactttgagtattttggaccagac
ttcaagctccatatcagcccctctaacatggccaatcagaatacaccagagtatttagac
aagatcaaaaccagactgtttgagaacttgaggatgttaccacatgcacctggtgtacaa
agtatagcaattccagaagatggtgtagcggaagagagtgaagatgaagacaaggctagt
ccagatgagagaatttctatacgtgcttcagacaaacgcattgccccagacaatgaatat
tcagattctgaagatgagggtgacgggcgaagagatgaacgatcctttaagcccaaaaag
aaaacaaaaacggatgagagtgcaaccaataatggtgcaggagaggacaagaaggacccc
tctatcacttctgcaaaggaggaaaagtctggttctcaggttggacaaaatgaaaccaaa
gtggaatcttga
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