Penaeus vannamei (Pacific white shrimp): 113807987 Help Entry 113807987         CDS       T06111                                  Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism pvm  Penaeus vannamei (Pacific white shrimp) Pathway pvm04512   ECM-receptor interaction pvm04518   Integrin signaling Brite KEGG Orthology (KO) [BR:pvm00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     113807987    04518 Integrin signaling     113807987  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:pvm00536]     113807987 Glycosaminoglycan binding proteins [BR:pvm00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    113807987 SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI New_glue Motif Other DBs NCBI-GeneID:  113807987 NCBI-ProteinID:  XP_027215105 LinkDB All DBs Position 7:11214031..11234696 Genome browser AA seq 1555 aa AA seqDB search MWRLPDPLRRPPLAAAATLLLLAAAALAEPEPEAKPQDYNYYDYDYYNYDDYDEYGPDES YDPYEAEASPDPYATPAPYDPYPDPEEEEEPYDPYATPAPYDPYDPYATPAPYDPYDPYA TQPPPYDPYGRDPYEQTEPPTTTTTTTTTTTTTTTTPPPPPPPTPRRELDYERRASRPRR PKGQRPDRRPTEEEPTEIVGPTQPDTDRGAVGAAGSPGERGPTGMPGTPGIPGDPGPPGP MPDITPWISQLSQSQGGEKGPALSYELQAQVGPIGPRGPAGNPGPAGPQGFQGMRGEPGD PGPSGSTGPPGPRGLPGIPGKDGENGEDGAAGPPGAVGPPGPRGLPGMPGLPGVKGHRGF PGLDGAKGEQGSSGDKGASGPPGQPGPIGPMGAAGPRGERGREGPPGPPGLRGIDGIAGP PGPPGGPGKPGPPGFPGSAGAKGDQGVQGPKGSQGLQGPRGEAGKPGIPGEAGPQGPSGK DGLAGEKGAPGTQGDAGPPGFPGARGPPGLPGSPGVPGAKGERGLTGERGFKGEFGMKGE GGTPGPRGLPGPPGSPGKRGKRGMVGPSGGLGPQGERGPPGGRGLPGADGPPGPKGQSGD PGPPGNVGQKGREGNPGPSGMPGLRGLRGPGGLSGPPGKTGRPGERGAPGADGKPGDQGP QGIQGLPGPMGMPGAQGQIGEPGKEGSPGETGPTGPRGDPGKDGSAGPIGQPGPTGPSGE RGPPGPPGARGFQGLPGAPGRDGTAGKDGEAGLQGPRGLPGGPGLRGTRGFPGERGAQGP PGETGARGESGLPGPDGPAGPPGPSGQKGHAGPSGLVGLPGGRGPVGLPGEKGERGGIGR AGPEGPPGRQGDQGPQGVMGPPGPPGEPAEKGDPGPPGPPGEAGANGMMGERGPQGQQGI QGFPGPLGPPGVGGPKGQRGLPGQKGSQGNPGPVGQPGPTGSQGLPGLNGAKGQRGESGQ RGEPGLMGPPGRPGTAGTPGSAGEPGPTGLAGNPGIKGSPGDTGRPGLPGPSGQPGAPGP EGPKGEAGPQGRIGQVGKPGPPGPSGERGLPGLPGPPGPPGLRGQTGARGEPGTEGKRGA EGPVGPPGLTGPPGAIGPSGDTGAPGADGKPGPPGISGRTGDKGPPGSPGQTGSPGPTGL PGPPGPAGPIGPTGERGDRGETGPQGVEGPSGPRGKPGAPGVQGEKGDTGAAGPKGAKGH RGLIGLQGLPGPSGPSGDKGVPGVAGPPGPSGEPGPKGPPGRDGGIGIQGIMGPPGPRGP SGEDGSSGPPGPPGPAGPPGPPGESMGYDAMTLAALLNRDQTKGPDPLQGDDSDVPARLF GKEITDDERRDLITKAYEQLKTSFKKFLKPEGTKESPAKTCRDLAYAHPELPSGEYFVDP NEGDVKDAIVVHCDMEEKATCVLPKPGMTEEFNWRGRSRGLTWLGEEISPGFEFTYKADN NQLSFLQLLSSSASQEITYHCKNSIAVFDASKRSFRNALRLMTISDTELNARGNNKFRYR VVEDGCKTKSSSWSATKIRYRTDKPQRLPFVDIGLRDVGEEDQSFKIEVGPVCYS NT seq 4668 nt NT seq  +upstreamnt  +downstreamnt atgtggcggctccccgaccccctgaggcggcccccgctggccgccgcggccaccttgctc ctgctggctgccgcagctctcgcagaaccggaacctgaagccaagccccaagattacaac tactacgattacgattattataattacgacgattatgatgaatatggacccgatgaatca tatgacccttatgaggcggaggcgtcacccgacccctatgccacgccggccccgtatgac ccctaccctgaccctgaggaggaggaggaaccttacgatccttacgccacgccggcgcct tatgacccctacgacccctatgccacgccggcgccctatgacccctacgacccctatgcc acgcagccgccgccgtatgacccatacgggcgcgatccctatgaacaaactgaaccccca accactaccactaccacgaccactaccaccacaaccaccacaactacacctccgcctccg ccaccgccaacgccgagacgggaactggattacgaaagaagagcgtccaggccgcgacgg ccaaagggccagcgcccagatcgccggccgacggaagaagaaccaacggaaatcgtgggc ccaacccagccagacactgacagaggcgcggtaggagctgcaggatcaccaggcgaacga ggtcctacgggaatgccaggcacccctggcatccccggtgaccctggccctcctggaccc atgcccgacatcacaccatggatatcccagctgtcgcagtcacaaggaggcgagaaaggg ccagccctgagctacgaactgcaggctcaagtcggtcccatcggcccgagaggtcccgca ggtaaccccggtcccgccggtcctcagggtttccagggtatgcgaggcgaaccaggtgat cccggaccttccgggtcaaccggtccacctggtccacgcggtctccctggtattcctgga aaagatggagagaacggtgaggatggagctgcaggtcccccaggcgctgttggcccccct gggcctcgtggcctccccggaatgccaggcctccctggtgtgaagggacaccgtggcttc cctggtctcgacggcgccaagggtgaacagggatcgtctggagacaagggagcctccggt cctcctggacagcctggtcctatcggccccatgggtgctgcaggtcctcgcggtgagcgc ggtcgagaaggtcccccagggcctcctggtctgcgtggcattgacggcattgcaggtccc ccaggtccccccggtggccccggaaagcccggcccccccggattccctggcagcgctggc gccaagggtgaccagggtgtgcaaggccccaagggttcccagggtcttcaaggtccacga ggcgaggctggcaaacccggcatccccggcgaggcaggcccccagggaccctcgggcaaa gacggacttgccggagaaaagggagctcctggtacccagggagatgctggtcctcccggt ttccccggagctcgaggtccccctggccttcctggcagccccggtgttcctggcgccaag ggcgagaggggtctgaccggcgagcgaggcttcaagggagagttcggtatgaagggcgag ggaggaaccccaggcccccgaggccttcccgggccccccggatcccctggcaagagaggc aagagaggcatggtcggtccttctggaggattgggccctcagggagaacgaggaccccct ggaggccgaggtctcccaggagctgacggaccccctggacccaagggccaaagcggcgac cctggaccccccggaaacgtcggacagaagggtcgcgaaggaaaccctggtccttctggc atgcccggcctacgcggtctgcgaggccctggagggctttcaggtccccctggcaagaca ggtcgccccggcgagcgaggtgcccccggcgctgacggcaaaccaggcgaccaaggaccc cagggcattcagggtctcccaggccctatgggaatgccaggggcacaaggacagattggc gaaccaggcaaggaaggctcccctggagaaaccggtcccaccggccctcgaggtgaccct ggtaaggacggatccgctggtcccatcggccagcctggccccaccggtccttctggcgag cgcggtccccctggtcctcccggcgcacgtggattccaaggcctccctggcgcccccgga agagacggtacggctggcaaggacggagaggcgggtctgcaaggtcctcgtggtcttcct ggcggccctggcctgcgcggtactcgaggcttccccggagagcgaggagctcaaggtcca cccggagagactggagcccgaggagagtctggccttcctggccccgacggaccagcaggt cctccaggtccctctggccaaaagggtcacgccggtccatctggtcttgttggtcttcct ggcggtcgcggtcccgttggtctgcccggagagaagggagagagaggaggcatcggaaga gccggtcctgaaggtcccccaggtcgtcaaggtgaccaaggtcctcagggtgtcatgggt cccccgggtccacctggagagccagcagaaaagggagaccctggtccaccaggtcctcct ggcgaggccggtgcaaacggcatgatgggcgagagaggtcctcagggccagcagggtatc cagggcttcccaggtcctcttgggcctcctggcgttggaggaccgaagggccagcgtggt cttcccggacagaagggatcgcaaggaaatcctggaccagtgggccagcctggccccacc ggttcccagggactgcccggcctcaacggtgccaagggacaacgcggagagagcggtcag cgaggtgaacctggtctcatgggtccacctgggcgacctggcaccgccggtactcctgga tctgcaggagaaccgggtccaactggtctggctggcaaccctggcatcaagggctcccct ggagacacaggacgccctggccttccagggccatcaggtcagcctggtgcccctggaccc gaaggtcccaagggtgaggccggtccccagggccgaatcggtcaagttggaaagcctggt cctcctggaccttcaggagaacgtggccttcctggtctgcctggcccgcctggcccacct ggtctccgtggacaaaccggtgctcggggagagcctggcacagaaggaaagcgcggcgct gaaggtcccgtcggcccacctggtcttactggtccccccggcgccattggcccatctgga gacactggcgctcctggtgcagatggcaagcccggaccccccggtatttctggacgcaca ggagacaaaggaccccccggatcccctggacaaactggcagccctggacccactggtctg cccggacctccgggcccggccggacctattggcccaacaggagaacgaggagaccgcgga gaaactggacctcagggcgtggagggaccttctggtcctcgaggcaagcctggcgcacct ggcgttcaaggcgagaagggagacactggtgcagcaggaccgaagggagccaagggtcac cgcggtcttattggtctccagggtctgcccggtccctctggtccttctggtgacaagggt gttcctggcgttgctggtccccctggtccatccggcgagcctggccccaagggtccgcct ggacgcgacggaggtattggtatccaaggtatcatgggtccccccggtccccgcggtcct tctggcgaagacggctcctcaggtcccccaggtcctcctggtcctgctggtccgcctggt cctcctggtgagtccatgggctacgacgcaatgaccttggccgccctcctcaaccgggac cagaccaagggacccgacccactgcagggagacgactccgacgtcccggcccgcctcttc ggcaaggagatcacggacgacgagcgccgcgacctcatcaccaaggcctacgaacagctc aagacctccttcaagaagttcctcaagccggaaggcaccaaggaatctcctgcaaagacc tgccgcgatctcgcatatgctcatccagaactcccaagtggcgaatacttcgtcgatccc aatgagggtgacgtcaaggacgccatcgtcgtgcactgcgacatggaggagaaggcaacg tgcgtgctgcccaagcccggcatgacggaagagttcaactggcgcggcagaagtcgaggc ctcacctggctcggagaagaaatcagcccaggcttcgagttcacatacaaggcggacaac aaccagctgtccttcctgcagctgctgtcatcatccgcctcccaggaaatcacgtaccac tgcaagaattccatcgccgtcttcgatgcttccaagaggagcttccgcaacgcccttcgc ctcatgaccatctcagacaccgaacttaacgccagaggaaacaacaagttcagatatcga gtggtcgaggacggttgtaagactaaatcgagcagctggtccgccaccaagattcgttac cgcacagacaaacctcagcggctgcccttcgtggacatcggtctcagagacgtcggtgaa gaggaccaatcgtttaagatcgaagtcggaccggtatgttattcgtaa

DBGET integrated database retrieval system